These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [TTTAAGCTAAACGTCGTAAGTTAGCAATTAATAAAGAGAAATATTAAACGGATACTTTTAATTACTGTTTGAAGAAGTCTCAGAAGATAAATTTGTTAAAGTGATTATTTTCATTCAACAAATCTTCGTGTACACACAGTGATTGTTAAACGATAAAATATGGGAAAAAGTAAACTAACGCGCATTCTATTACTTACATGAATAAACACAGGAATGAATATCTGGACAATTGGTCGTCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTGCCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACCTTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGAAAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATACTGCCACACTCTGAAAGTCTCGATATGAGATTNTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCATTAAGTTCACTTATAGTTTGACGAATCCCTCTAGAAAACGTNCACCAGTA] [+] EMBL CD145522 [TTTAAGCTAAACGTCGTAAGTTAGCAATTAATAAAGAGAAATATTAAACGGATACTTTTAATTACTGTTTGAAGAAGTCTCAGAAGATAAATTTGTTAAAGTGATTATTTTCATTCAACAAATCTTCGTGTACACACAGTGATTGTTAAACGATAAAATATGGGAAAAAGTAAACTAACGCGCATTCTATTACTTACATGAATAAACACAGGAATGAATATCTGGACAATTGGTCGTCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTGCCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACCTTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGAAAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATACTGCCACACTCTGAAAGTCTCGATATGAGATTNTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCATTAAGTTCACTTATAGTTTGACGAATCCCTCTAGAAAACGTNCACCAGTA] consensusID : consensus_2136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [ACTTGAAAGATACATCAGCAGATCCCTCTTCATGTAAAGTAGCTTTATTCTCAGTCTGACCCTCTAAATAAAGGCGTTGATGAATCAGTTTATATTTAGACTTTATCATTCTGTAGTAAGATATCCGCTCCACCAATGAGTTTAGATATAAATTAATTTCATGAACATCTGGTGGATTGGAAAATGAATAAACACAGGAATGAATATCTGGACAATTGGTCGTCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTGCCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACCTTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGAAAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATTACTGCCACACTCTGAAAGTCTCGATATGAGATTTTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCATTAAGTTCACTTATATTTTGACGAATTCCTCTAGAAAACGTCCACC] [-] EMBL CD082969 [ACTTGAAAGATACATCAGCAGATCCCTCTTCATGTAAAGTAGCTTTATTCTCAGTCTGACCCTCTAAATAAAGGCGTTGATGAATCAGTTTATATTTAGACTTTATCATTCTGTAGTAAGATATCCGCTCCACCAATGAGTTTAGATATAAATTAATTTCATGAACATCTGGTGGATTGGAAAATGAATAAACACAGGAATGAATATCTGGACAATTGGTCGTCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTGCCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACCTTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGAAAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATTACTGCCACACTCTGAAAGTCTCGATATGAGATTTTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCATTAAGTTCACTTATATTTTGACGAATTCCTCTAGAAAACGTCCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2136#0 -TTTAAGCTAAACGTCGTAAGTTAGCAATTAATAAAGAGAAATATTAAACGGATACTTTT 59 consensus_2136#1 ACTTGAAAGATACATCAGCAGATCCCTCTTCATGTAAAGTAGCTTTATTC--TCAGTCTG 58 ** * * ** ** ** * * ** ** * ** * *** * * * * consensus_2136#0 AATTACTGTTTGAAGAAGTCTCAGAAGATAAATTTGTTAAAGTGATTATTTTCATTCAAC 119 consensus_2136#1 ACCCTCTAAATAAAGGCGTT------GATGAATCAGTTTA------TATTTAGACTTTAT 106 * ** * *** ** *** *** *** * ***** * * * consensus_2136#0 AAATCTTCGTGTACACACAGTGATTGTTAAACGATAAAATATGGGAAAAAGTAAACTAAC 179 consensus_2136#1 CATTCT--GTAGTAAGATATCCGCTCC--ACCAATGAGTTTAGATATAAATTAATTTCAT 162 * *** ** * * * * * * ** * * * * *** *** * * consensus_2136#0 GCGCATTCTATTACTT---ACATGAATAAACACAGGAATGAATATCTGGACAATTGGTCG 236 consensus_2136#1 GAACATCTGGTGGATTGGAAAATGAATAAACACAGGAATGAATATCTGGACAATTGGTCG 222 * *** * ** * *************************************** consensus_2136#0 TCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTG 296 consensus_2136#1 TCTCATGGTGAAACGTTTCTGTTAATGGAGGTACATGAACTGATGTTTGTTCGAATTCTG 282 ************************************************************ consensus_2136#0 CCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACC 356 consensus_2136#1 CCTAAAACGTCATAATAGTCAACATTTAGAAAATGCATTAAACTGGTAGTGTACAGAACC 342 ************************************************************ consensus_2136#0 TTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGA 416 consensus_2136#1 TTTTAACTTACAGTATTAGTAAGCCCAAGTGAATTTAGTTCAGGGATAATAAAATCAGGA 402 ************************************************************ consensus_2136#0 AAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAAT-ACTGCCACACTCTGAA 475 consensus_2136#1 AAACGTGCAGGTGTTAGTTCACGATTTCGTATTGCTCTGAAATTACTGCCACACTCTGAA 462 ******************************************* **************** consensus_2136#0 AGTCTCGATATGAGATTNTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCA 535 consensus_2136#1 AGTCTCGATATGAGATTTTCATTAGTCAATCCAGAAAAGTCAGCCAAAATACTACTCGCA 522 ***************** ****************************************** consensus_2136#0 TTAAGTTCACTTATAGTTTGACGAATCCCTCTAGAAAACGTNCACCAGTA 585 consensus_2136#1 TTAAGTTCACTTATATTTTGACGAATTCCTCTAGAAAACGTCCACC---- 568 *************** ********** ************** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||