cluster # 2162

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Schistosoma mansoni
cluster # 2162 cluster # 2162 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2162#0 length = 305 sequences # 1

consensus_2162#1 length = 294 sequences # 1

consensusID : consensus_2162#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [TGTCCTAGCTGCATGGAATTACAATGCTACTTACAGATCGTAATTTAAATACAACTTTCTTCGATCCTGCCGGAGAGGAGATCCAATTCTATACCAACACCTATTTTGATTCTTTGGTCATCCAGAAGTATACATCTTAATCCTACCGGGCTTCGGAATTATTTCACACATTGTTACTTATTACTCCGGAAAAAAAGAACCTTTTGGCTATATAGGTATAGTATGAGCAATAATATCAATTGGATTCCTGGGCTTTATTGTTTGAGCTCATCATATATTTACAGTAGGACTTGACGTAAACACAC]

[+] EMBL AW497763             [TGTCCTAGCTGCATGGAATTACAATGCTACTTACAGATCGTAATTTAAATACAACTTTCTTCGATCCTGCCGGAGAGGAGATCCAATTCTATACCAACACCTATTTTGATTCTTTGGTCATCCAGAAGTATACATCTTAATCCTACCGGGCTTCGGAATTATTTCACACATTGTTACTTATTACTCCGGAAAAAAAGAACCTTTTGGCTATATAGGTATAGTATGAGCAATAATATCAATTGGATTCCTGGGCTTTATTGTTTGAGCTCATCATATATTTACAGTAGGACTTGACGTAAACACAC]




>consensus_2162#0
TGTCCTAGCTGCATGGAATTACAATGCTACTTACAGATCGTAATTTAAATACAACTTTCT
TCGATCCTGCCGGAGAGGAGATCCAATTCTATACCAACACCTATTTTGATTCTTTGGTCA
TCCAGAAGTATACATCTTAATCCTACCGGGCTTCGGAATTATTTCACACATTGTTACTTA
TTACTCCGGAAAAAAAGAACCTTTTGGCTATATAGGTATAGTATGAGCAATAATATCAAT
TGGATTCCTGGGCTTTATTGTTTGAGCTCATCATATATTTACAGTAGGACTTGACGTAAA
CACAC

consensusID : consensus_2162#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [AGATAGTTATTTTAATACATCTTTTTTCGATCCAACCGGAGGAGGAGGATCCAATTTTATAGCGACACCTATTTTGATTCTTTGGTCATCCAGAAGTATACATCTTGATCCCCCCCCCCTTCGGAAAAAAATCACACATTGTTTCTTATTACTCCGGAAAAAAAGAACCTTTTGGCTATATAGGTATAGTATGAACAATAATATCAATTGGATTCCTGGGCTTTATTGTTTGAGCTCATCATATATTTGCAGTAGGATATGACGTAGACACGGTTTCCTATTTTACATCAGCCA]

[-] EMBL CD166326             [AGATAGTTATTTTAATACATCTTTTTTCGATCCAACCGGAGGAGGAGGATCCAATTTTATAGCGACACCTATTTTGATTCTTTGGTCATCCAGAAGTATACATCTTGATCCCCCCCCCCTTCGGAAAAAAATCACACATTGTTTCTTATTACTCCGGAAAAAAAGAACCTTTTGGCTATATAGGTATAGTATGAACAATAATATCAATTGGATTCCTGGGCTTTATTGTTTGAGCTCATCATATATTTGCAGTAGGATATGACGTAGACACGGTTTCCTATTTTACATCAGCCA]




>consensus_2162#1
AGATAGTTATTTTAATACATCTTTTTTCGATCCAACCGGAGGAGGAGGATCCAATTTTAT
AGCGACACCTATTTTGATTCTTTGGTCATCCAGAAGTATACATCTTGATCCCCCCCCCCT
TCGGAAAAAAATCACACATTGTTTCTTATTACTCCGGAAAAAAAGAACCTTTTGGCTATA
TAGGTATAGTATGAACAATAATATCAATTGGATTCCTGGGCTTTATTGTTTGAGCTCATC
ATATATTTGCAGTAGGATATGACGTAGACACGGTTTCCTATTTTACATCAGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2162#0      TGTCCTAGCTGCATGGAATTACAATGCTACTTACAGATCGTAATTTAAATACAACTTTCT 60
consensus_2162#1      ----------------------------------AGATAGTTATTTTAATACATCTTTTT 26
                                                        **** ** **** ****** **** *

consensus_2162#0      TCGATCCTGCCGGAGAGGA--GATCCAATTCTATACCAACACCTATTTTGATTCTTTGGT 118
consensus_2162#1      TCGATCCAACCGGAGGAGGAGGATCCAATTTTATAGCGACACCTATTTTGATTCTTTGGT 86
                      *******  ******  *   ********* **** * **********************

consensus_2162#0      CATCCAGAAGTATACATCTTAATCCTACCGGGCTTCGGAATTATTTCACACATTGTTACT 178
consensus_2162#1      CATCCAGAAGTATACATCTTGATCCCCCCCCCCTTCGGAAAAAAATCACACATTGTTTCT 146
                      ******************** ****  **   ********  *  ************ **

consensus_2162#0      TATTACTCCGGAAAAAAAGAACCTTTTGGCTATATAGGTATAGTATGAGCAATAATATCA 238
consensus_2162#1      TATTACTCCGGAAAAAAAGAACCTTTTGGCTATATAGGTATAGTATGAACAATAATATCA 206
                      ************************************************ ***********

consensus_2162#0      ATTGGATTCCTGGGCTTTATTGTTTGAGCTCATCATATATTTACAGTAGGACTTGACGTA 298
consensus_2162#1      ATTGGATTCCTGGGCTTTATTGTTTGAGCTCATCATATATTTGCAGTAGGATATGACGTA 266
                      ****************************************** ********  *******

consensus_2162#0      AACACAC--------------------- 305
consensus_2162#1      GACACGGTTTCCTATTTTACATCAGCCA 294
                       ****