These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [CTACGAGGCAGATCGGCACGAGGGTCATAAAGATTTTTGAACTATTCATCTTAGAAGTAAATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGTTGCCAATTCGAAGGGAAAAAGAAGAAGAAGAAGAAGAGAAACTTAACAACTAAAAGTAAAGTTTTCACAAAAACAATTAACAAGGACATCACAACTCAAAGACAAGATTAAACATGTTCTACAAACGAATAAATGACTATATACTTCTATGTATGCTCATTGCCTTCTTAACTATTTCAATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGAACGATGCGTGTTAAGCGAACAAATTTCTTTGAATGAATGTTGTTCAAATCCTTCGATTCATGATGTTTGTAATTTTTGTGATCAAAACTCTGAAACAGAGATCGATATATCTGATTGTCTTTTGACCTATTTTCGAATTATGCTAAAAAGACGAGGAATGATTGGCAAACGTCGAGGTTTTATGGGTT] [+] EMBL CD083368 [CTACGAGGCAGATCGGCACGAGGGTCATAAAGATTTTTGAACTATTCATCTTAGAAGTAAATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGTTGCCAATTCGAAGGGAAAAAGAAGAAGAAGAAGAAGAGAAACTTAACAACTAAAAGTAAAGTTTTCACAAAAACAATTAACAAGGACATCACAACTCAAAGACAAGATTAAACATGTTCTACAAACGAATAAATGACTATATACTTCTATGTATGCTCATTGCCTTCTTAACTATTTCAATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGAACGATGCGTGTTAAGCGAACAAATTTCTTTGAATGAATGTTGTTCAAATCCTTCGATTCATGATGTTTGTAATTTTTGTGATCAAAACTCTGAAACAGAGATCGATATATCTGATTGTCTTTTGACCTATTTTCGAATTATGCTAAAAAGACGAGGAATGATTGGCAAACGTCGAGGTTTTATGGGTT] consensusID : consensus_2170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [ACGAGTCATAAAGATTNGGANCTATTCATCTTAGAAGTAAATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGNNGCCANTNCGANGGGAAAAAGAAGAAGAAGAAGANGAAGAGAANCTTANCAACTAAAAGTAATGTNNTCACAAAAACAATTANCAAGGACATCACAACTCAAGGACANGATCAAACATGTTCTACAANCGAATAAATGACTATATACTCCTATGTATGCTCATGGCCTNCTTAACTATTTCAATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGANCGATGCGTGTTANGCGAACANATTTCTTGGATTGATTNTGGTCNANATCCTCCNATCANGATGTTTGGGATTTTGGGGATCANACTCTNAAAC] [+] EMBL SM4051 [ACGAGTCATAAAGATTNGGANCTATTCATCTTAGAAGTAAATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGNNGCCANTNCGANGGGAAAAAGAAGAAGAAGAAGANGAAGAGAANCTTANCAACTAAAAGTAATGTNNTCACAAAAACAATTANCAAGGACATCACAACTCAAGGACANGATCAAACATGTTCTACAANCGAATAAATGACTATATACTCCTATGTATGCTCATGGCCTNCTTAACTATTTCAATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGANCGATGCGTGTTANGCGAACANATTTCTTGGATTGATTNTGGTCNANATCCTCCNATCANGATGTTTGGGATTTTGGGGATCANACTCTNAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2170#0 CTACGAGGCAGATCGGCACGAGGGTCATAAAGATTTTTGAACTATTCATCTTAGAAGTAA 60 consensus_2170#1 -------------------ACGAGTCATAAAGATTNG-GANCTATTCATCTTAGAAGTAA 40 * ************ ** ******************* consensus_2170#0 ATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGTTG 120 consensus_2170#1 ATAATTCTCAATTCACCAGGTTAATAACAAACGTATCCCTATTGAAAGATTGTTTTGNNG 100 ********************************************************* * consensus_2170#0 CCAATTCGAAGGGAAAAAGAAGAAGAAGAAGAAGA---GAAACTTAACAACTAAAAGTAA 177 consensus_2170#1 CCANTNCGANGGGAAAAAGAAGAAGAAGAAGANGAAGAGAANCTTANCAACTAAAAGTAA 160 *** * *** ********************** ** *** **** ************* consensus_2170#0 AGTTTTCACAAAAACAATTAACAAGGACATCACAACTCAAAGACAAGATTAAACATGTTC 237 consensus_2170#1 TGTNNTCACAAAAACAATTANCAAGGACATCACAACTCAAGGACANGATCAAACATGTTC 220 ** *************** ******************* **** *** ********** consensus_2170#0 TACAAACGAATAAATGACTATATACTTCTATGTATGCTCATTGCCTTCTTAACTATTTCA 297 consensus_2170#1 TACAANCGAATAAATGACTATATACTCCTATGTATGCTCATGGCCTNCTTAACTATTTCA 280 ***** ******************** ************** **** ************* consensus_2170#0 ATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGAACGATGCGTGTTAAGC 357 consensus_2170#1 ATATCTAGAGCAAAATACTTCAAATGCAATGTTGCAGCTTGCGANCGATGCGTGTTANGC 340 ******************************************** ************ ** consensus_2170#0 GAACAAATTTCTTTGAATGAATGTTGTTCAAATCCTTCGATTCATGATGTTTGTAATTTT 417 consensus_2170#1 GAACANATTTCTTGGATTGATTNTGGTCNANATCCTCCNAT-CANGATGTTTGGGATTTT 399 ***** ******* ** *** * * ** * ***** * ** ** ******** ***** consensus_2170#0 TGTGATCAAAACTCTGAAACAGAGATCGATATATCTGATTGTCTTTTGACCTATTTTCGA 477 consensus_2170#1 GGGGATCANA-CTCTNAAAC---------------------------------------- 418 * ***** * **** **** consensus_2170#0 ATTATGCTAAAAAGACGAGGAATGATTGGCAAACGTCGAGGTTTTATGGGTT 529 consensus_2170#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||