These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [AGTTTATCAAAAGGGAATAATTTACAAGATTTATCATCGAATTCAACAAAAAATGGTTATACCGTCTTTGGACCCCAACAAGACGATGATTTTGGATCGAAAGAAATTGATTATGGCAGTGATACCGATGCCGTAGGCCCAATGGTCTTTTCTGGGCGATGGGATTCAAAGGAATTTCATAATGGGCAAAAAAATCCCACCCCTAAAGGGACTAATATAAAAGGGACCACTTATTCTAATGGGTTAACTTTCTTGGATTGGAAAGCATTACTAAGTCCAAATCATGAAGCATCAAATGGGTTAATTCATCGAATAGACGGGGCTTTTCCACCGACATATAAATATC] [+] EMBL CD166419 [AGTTTATCAAAAGGGAATAATTTACAAGATTTATCATCGAATTCAACAAAAAATGGTTATACCGTCTTTGGACCCCAACAAGACGATGATTTTGGATCGAAAGAAATTGATTATGGCAGTGATACCGATGCCGTAGGCCCAATGGTCTTTTCTGGGCGATGGGATTCAAAGGAATTTCATAATGGGCAAAAAAATCCCACCCCTAAAGGGACTAATATAAAAGGGACCACTTATTCTAATGGGTTAACTTTCTTGGATTGGAAAGCATTACTAAGTCCAAATCATGAAGCATCAAATGGGTTAATTCATCGAATAGACGGGGCTTTTCCACCGACATATAAATATC] consensusID : consensus_2174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 129 fasta sequence [ACCACTANTACGGGTACTAATATAAAAGTGGACAACTTATTCTAATGGTTTAACTTTCTTGGATTGTAAAGCATTACTAAGTCCAGATCATGAAGCATCAAATGGTTTAATTCATCGAATAGACGGAGC] [+] EMBL SMAA25569 [ACCACTANTACGGGTACTAATATAAAAGTGGACAACTTATTCTAATGGTTTAACTTTCTTGGATTGTAAAGCATTACTAAGTCCAGATCATGAAGCATCAAATGGTTTAATTCATCGAATAGACGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2174#0 AGTTTATCAAAAGGGAATAATTTACAAGATTTATCATCGAATTCAACAAAAAATGGTTAT 60 consensus_2174#1 ------------------------------------------------------------ consensus_2174#0 ACCGTCTTTGGACCCCAACAAGACGATGATTTTGGATCGAAAGAAATTGATTATGGCAGT 120 consensus_2174#1 ------------------------------------------------------------ consensus_2174#0 GATACCGATGCCGTAGGCCCAATGGTCTTTTCTGGGCGATGGGATTCAAAGGAATTTCAT 180 consensus_2174#1 ------------------------------------------------------------ consensus_2174#0 AATGGGCAAAAAAATCCCACCCCTAAAGGGACTAATATAAAAG-GGACCACTTATTCTAA 239 consensus_2174#1 ---------------ACCACTANTACGGGTACTAATATAAAAGTGGACAACTTATTCTAA 45 **** ** ** ************* **** *********** consensus_2174#0 TGGGTTAACTTTCTTGGATTGGAAAGCATTACTAAGTCCAAATCATGAAGCATCAAATGG 299 consensus_2174#1 TGGTTTAACTTTCTTGGATTGTAAAGCATTACTAAGTCCAGATCATGAAGCATCAAATGG 105 *** ***************** ****************** ******************* consensus_2174#0 GTTAATTCATCGAATAGACGGGGCTTTTCCACCGACATATAAATATC 346 consensus_2174#1 TTTAATTCATCGAATAGACGGAGC----------------------- 129 ******************** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||