cluster # 2218

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Schistosoma mansoni
cluster # 2218 cluster # 2218 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2218#0 length = 485 sequences # 1

consensus_2218#1 length = 178 sequences # 1

consensusID : consensus_2218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [GAATCGGCACGAGGGTGATATCAAAATCCAACAAATTTTCAACTGCTGGTTTATCTACAATAACTAATCGAATTTCTTCAACAAACATTTTATTTCATCGTGTATCTGAATATCATTTACTTTGTGCACGTTTATCAATGAATTCATATAAACAAGATCTATCAGAAGCTGAATTCAATGCTAGTTTAATTATTGAAGCTGATCCAGAAGCTGTTGAGGCTTGGGCATGTTTAGGTCATTTACGTTATATCGCTGGAGATTTAAATGCAGCACGTTCTTGTTATGAACGTTGTTTATGTTTAATTACATGGCCACCTAAAGATCAACATATTTTATTGTTACGTTTGGGTTCGATTTATTTACAGGAGTTGAAGTATAAAGAAGCTAAAGATATTTACTTACGTGCATGTTAAAACTCTCCAACTTGTGCTACGTGGCTAGGTGTTGGTAAAGCTTTTTATAGATTAGAGGAACTAGAAAATGCT]

[+] EMBL CD083646             [GAATCGGCACGAGGGTGATATCAAAATCCAACAAATTTTCAACTGCTGGTTTATCTACAATAACTAATCGAATTTCTTCAACAAACATTTTATTTCATCGTGTATCTGAATATCATTTACTTTGTGCACGTTTATCAATGAATTCATATAAACAAGATCTATCAGAAGCTGAATTCAATGCTAGTTTAATTATTGAAGCTGATCCAGAAGCTGTTGAGGCTTGGGCATGTTTAGGTCATTTACGTTATATCGCTGGAGATTTAAATGCAGCACGTTCTTGTTATGAACGTTGTTTATGTTTAATTACATGGCCACCTAAAGATCAACATATTTTATTGTTACGTTTGGGTTCGATTTATTTACAGGAGTTGAAGTATAAAGAAGCTAAAGATATTTACTTACGTGCATGTTAAAACTCTCCAACTTGTGCTACGTGGCTAGGTGTTGGTAAAGCTTTTTATAGATTAGAGGAACTAGAAAATGCT]




>consensus_2218#0
GAATCGGCACGAGGGTGATATCAAAATCCAACAAATTTTCAACTGCTGGTTTATCTACAA
TAACTAATCGAATTTCTTCAACAAACATTTTATTTCATCGTGTATCTGAATATCATTTAC
TTTGTGCACGTTTATCAATGAATTCATATAAACAAGATCTATCAGAAGCTGAATTCAATG
CTAGTTTAATTATTGAAGCTGATCCAGAAGCTGTTGAGGCTTGGGCATGTTTAGGTCATT
TACGTTATATCGCTGGAGATTTAAATGCAGCACGTTCTTGTTATGAACGTTGTTTATGTT
TAATTACATGGCCACCTAAAGATCAACATATTTTATTGTTACGTTTGGGTTCGATTTATT
TACAGGAGTTGAAGTATAAAGAAGCTAAAGATATTTACTTACGTGCATGTTAAAACTCTC
CAACTTGTGCTACGTGGCTAGGTGTTGGTAAAGCTTTTTATAGATTAGAGGAACTAGAAA
ATGCT

consensusID : consensus_2218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [AATTACCACAATTAATCAGAAGCATGAAATGTTCATTGTTAATTTCTCAACTTAAACAAGAGATTCAATTATATGGCGGGTTGACTTACTCTATAACAAGCTTTACCAACACCTAGCCACGTAGCACAAGTTGGAGAGTTTTTACACGCACGTAAGTAAATATCTTTAGCTTCTTTAT]

[+] EMBL CD154617             [AATTACCACAATTAATCAGAAGCATGAAATGTTCATTGTTAATTTCTCAACTTAAACAAGAGATTCAATTATATGGCGGGTTGACTTACTCTATAACAAGCTTTACCAACACCTAGCCACGTAGCACAAGTTGGAGAGTTTTTACACGCACGTAAGTAAATATCTTTAGCTTCTTTAT]




>consensus_2218#1
AATTACCACAATTAATCAGAAGCATGAAATGTTCATTGTTAATTTCTCAACTTAAACAAG
AGATTCAATTATATGGCGGGTTGACTTACTCTATAACAAGCTTTACCAACACCTAGCCAC
GTAGCACAAGTTGGAGAGTTTTTACACGCACGTAAGTAAATATCTTTAGCTTCTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2218#0      GAATCGGCACGAGGGTGATATCAAAATCCAACAAATTTTCAACTGCTGGTTTATCTACAA 60
consensus_2218#1      ----------------------------------------------------AATTACCA 8
                                                                          *  *** *

consensus_2218#0      TAACTAATCGAATTTCTTCAACAAACATT-TTATTTCATCGTGTATCTGAATATCATTTA 119
consensus_2218#1      CAATTAATCAGAAGCATGAAATGTTCATTGTTAATTTCTCAACTTAAACAAGAGATTCAA 68
                       ** *****  *    *  **    **** *** **  **   *     ** *   *  *

consensus_2218#0      CTTTGTGCACGTTTATCAATGAATTCATATAAACAAGATCTATCAGAAGCTGAATTCAAT 179
consensus_2218#1      TTATATGGCGGGTTGAC--TTACTCTATA---ACAAGCTTTACCAACACCTAGCCACG-- 121
                       * * **   * **  *  * * *  ***   ***** * ** **  * **     *   

consensus_2218#0      GCTAGTTTAATTATTGAAGCTGATCCAGAAGCTGTTGAGGCTTGGGCATGTTTAGGTCAT 239
consensus_2218#1      --TAGCACAA--GTTGGAGAGTTTTTACACGCACGTAAG---TAAATATCTTTAGCTTCT 174
                        ***   **   *** **    *  * * **   * **   *    ** ***** *  *

consensus_2218#0      TTACGTTATATCGCTGGAGATTTAAATGCAGCACGTTCTTGTTATGAACGTTGTTTATGT 299
consensus_2218#1      TTAT-------------------------------------------------------- 178
                      ***                                                         

consensus_2218#0      TTAATTACATGGCCACCTAAAGATCAACATATTTTATTGTTACGTTTGGGTTCGATTTAT 359
consensus_2218#1      ------------------------------------------------------------
                                                                                  

consensus_2218#0      TTACAGGAGTTGAAGTATAAAGAAGCTAAAGATATTTACTTACGTGCATGTTAAAACTCT 419
consensus_2218#1      ------------------------------------------------------------
                                                                                  

consensus_2218#0      CCAACTTGTGCTACGTGGCTAGGTGTTGGTAAAGCTTTTTATAGATTAGAGGAACTAGAA 479
consensus_2218#1      ------------------------------------------------------------
                                                                                  

consensus_2218#0      AATGCT 485
consensus_2218#1      ------