These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [GAATCGGCACGAGGGTGATATCAAAATCCAACAAATTTTCAACTGCTGGTTTATCTACAATAACTAATCGAATTTCTTCAACAAACATTTTATTTCATCGTGTATCTGAATATCATTTACTTTGTGCACGTTTATCAATGAATTCATATAAACAAGATCTATCAGAAGCTGAATTCAATGCTAGTTTAATTATTGAAGCTGATCCAGAAGCTGTTGAGGCTTGGGCATGTTTAGGTCATTTACGTTATATCGCTGGAGATTTAAATGCAGCACGTTCTTGTTATGAACGTTGTTTATGTTTAATTACATGGCCACCTAAAGATCAACATATTTTATTGTTACGTTTGGGTTCGATTTATTTACAGGAGTTGAAGTATAAAGAAGCTAAAGATATTTACTTACGTGCATGTTAAAACTCTCCAACTTGTGCTACGTGGCTAGGTGTTGGTAAAGCTTTTTATAGATTAGAGGAACTAGAAAATGCT] [+] EMBL CD083646 [GAATCGGCACGAGGGTGATATCAAAATCCAACAAATTTTCAACTGCTGGTTTATCTACAATAACTAATCGAATTTCTTCAACAAACATTTTATTTCATCGTGTATCTGAATATCATTTACTTTGTGCACGTTTATCAATGAATTCATATAAACAAGATCTATCAGAAGCTGAATTCAATGCTAGTTTAATTATTGAAGCTGATCCAGAAGCTGTTGAGGCTTGGGCATGTTTAGGTCATTTACGTTATATCGCTGGAGATTTAAATGCAGCACGTTCTTGTTATGAACGTTGTTTATGTTTAATTACATGGCCACCTAAAGATCAACATATTTTATTGTTACGTTTGGGTTCGATTTATTTACAGGAGTTGAAGTATAAAGAAGCTAAAGATATTTACTTACGTGCATGTTAAAACTCTCCAACTTGTGCTACGTGGCTAGGTGTTGGTAAAGCTTTTTATAGATTAGAGGAACTAGAAAATGCT] consensusID : consensus_2218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [AATTACCACAATTAATCAGAAGCATGAAATGTTCATTGTTAATTTCTCAACTTAAACAAGAGATTCAATTATATGGCGGGTTGACTTACTCTATAACAAGCTTTACCAACACCTAGCCACGTAGCACAAGTTGGAGAGTTTTTACACGCACGTAAGTAAATATCTTTAGCTTCTTTAT] [+] EMBL CD154617 [AATTACCACAATTAATCAGAAGCATGAAATGTTCATTGTTAATTTCTCAACTTAAACAAGAGATTCAATTATATGGCGGGTTGACTTACTCTATAACAAGCTTTACCAACACCTAGCCACGTAGCACAAGTTGGAGAGTTTTTACACGCACGTAAGTAAATATCTTTAGCTTCTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2218#0 GAATCGGCACGAGGGTGATATCAAAATCCAACAAATTTTCAACTGCTGGTTTATCTACAA 60 consensus_2218#1 ----------------------------------------------------AATTACCA 8 * *** * consensus_2218#0 TAACTAATCGAATTTCTTCAACAAACATT-TTATTTCATCGTGTATCTGAATATCATTTA 119 consensus_2218#1 CAATTAATCAGAAGCATGAAATGTTCATTGTTAATTTCTCAACTTAAACAAGAGATTCAA 68 ** ***** * * ** **** *** ** ** * ** * * * consensus_2218#0 CTTTGTGCACGTTTATCAATGAATTCATATAAACAAGATCTATCAGAAGCTGAATTCAAT 179 consensus_2218#1 TTATATGGCGGGTTGAC--TTACTCTATA---ACAAGCTTTACCAACACCTAGCCACG-- 121 * * ** * ** * * * * *** ***** * ** ** * ** * consensus_2218#0 GCTAGTTTAATTATTGAAGCTGATCCAGAAGCTGTTGAGGCTTGGGCATGTTTAGGTCAT 239 consensus_2218#1 --TAGCACAA--GTTGGAGAGTTTTTACACGCACGTAAG---TAAATATCTTTAGCTTCT 174 *** ** *** ** * * * ** * ** * ** ***** * * consensus_2218#0 TTACGTTATATCGCTGGAGATTTAAATGCAGCACGTTCTTGTTATGAACGTTGTTTATGT 299 consensus_2218#1 TTAT-------------------------------------------------------- 178 *** consensus_2218#0 TTAATTACATGGCCACCTAAAGATCAACATATTTTATTGTTACGTTTGGGTTCGATTTAT 359 consensus_2218#1 ------------------------------------------------------------ consensus_2218#0 TTACAGGAGTTGAAGTATAAAGAAGCTAAAGATATTTACTTACGTGCATGTTAAAACTCT 419 consensus_2218#1 ------------------------------------------------------------ consensus_2218#0 CCAACTTGTGCTACGTGGCTAGGTGTTGGTAAAGCTTTTTATAGATTAGAGGAACTAGAA 479 consensus_2218#1 ------------------------------------------------------------ consensus_2218#0 AATGCT 485 consensus_2218#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||