These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [GCCTCGAGGCCANGAATCGGCACGAGGAGAAACACAATTCAGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTGAGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTGCATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATTTGGATTTGAATGTTAATCGATATCCGGATTACACAGATCCTATAGACAGGATGAATAGATTTGATCGAGACAGAGAAATACCACTGAATATGATTTCATCTTCTTCTTCATTTATGCAAACCAATACTTGAATATACAATTAAGAATAATGGTAACAAGCATTCATTTCAGACTGTAAGAAGTAAGAATGTAGAGTACATGATATTATTCATTACCATACAATAGATTTTATTACTAACACTGCATATTCTACCTTTAGGGTTACTGGTTAATTATTCTGATGTAATCTACTACAAAGTACTTCAATTCTGCTTTGTTTTCTTTCGTAGTT] [+] EMBL CD083708 [GCCTCGAGGCCANGAATCGGCACGAGGAGAAACACAATTCAGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTGAGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTGCATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATTTGGATTTGAATGTTAATCGATATCCGGATTACACAGATCCTATAGACAGGATGAATAGATTTGATCGAGACAGAGAAATACCACTGAATATGATTTCATCTTCTTCTTCATTTATGCAAACCAATACTTGAATATACAATTAAGAATAATGGTAACAAGCATTCATTTCAGACTGTAAGAAGTAAGAATGTAGAGTACATGATATTATTCATTACCATACAATAGATTTTATTACTAACACTGCATATTCTACCTTTAGGGTTACTGGTTAATTATTCTGATGTAATCTACTACAAAGTACTTCAATTCTGCTTTGTTTTCTTTCGTAGTT] consensusID : consensus_2220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [TTTTAGTTAATGATTTTCATACAAGAGATCAAAAAATTGAAAACATCCCCGTTGCTGACGATTATTTTGGACAAACTGGTGGTAGTTATATTTTGTCAGCTCCAAATTTAGTAAATACTGAATGTTATGAAAATCGTTCACAGAATTTTACTGGTGATGTAATGATTGATCTGAAATCTCCATTATCAACAAGTCATGTGAATCCACAACAGTTACATGATCATTCAAGAAACACAATTCAGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTGAGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTGCATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATTTGGATTTGAATGTTAATCGATATCCGGATACACAGATCCTATAGACAGGATGA] [+] EMBL CD188474 [TTTTAGTTAATGATTTTCATACAAGAGATCAAAAAATTGAAAACATCCCCGTTGCTGACGATTATTTTGGACAAACTGGTGGTAGTTATATTTTGTCAGCTCCAAATTTAGTAAATACTGAATGTTATGAAAATCGTTCACAGAATTTTACTGGTGATGTAATGATTGATCTGAAATCTCCATTATCAACAAGTCATGTGAATCCACAACAGTTACATGATCATTCAAGAAACACAATTCAGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTGAGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTGCATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATTTGGATTTGAATGTTAATCGATATCCGGATACACAGATCCTATAGACAGGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2220#0 ------------------------------------------------------------ consensus_2220#1 TTTTAGTTAATGATTTTCATACAAGAGATCAAAAAATTGAAAACATCCCCGTTGCTGACG 60 consensus_2220#0 ------------------------------------------------------------ consensus_2220#1 ATTATTTTGGACAAACTGGTGGTAGTTATATTTTGTCAGCTCCAAATTTAGTAAATACTG 120 consensus_2220#0 ------------------------------------------------------------ consensus_2220#1 AATGTTATGAAAATCGTTCACAGAATTTTACTGGTGATGTAATGATTGATCTGAAATCTC 180 consensus_2220#0 --------------GCCTCGAGGCCANGA-ATCGGCACGAG-----GAGAAACACAATTC 40 consensus_2220#1 CATTATCAACAAGTCATGTGAATCCACAACAGTTACATGATCATTCAAGAAACACAATTC 240 ** *** * * ** ** ************* consensus_2220#0 AGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTG 100 consensus_2220#1 AGTTCGGTTATCGACCATCATCCTCTTTAGATCAATGTAATGAATCAGTCCATAAACCTG 300 ************************************************************ consensus_2220#0 AGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTG 160 consensus_2220#1 AGAATGGAATAACCTTAAACAATAGACCTTTTGGGACAGATTGGTCAACACGAAGGCTTG 360 ************************************************************ consensus_2220#0 CATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATT 220 consensus_2220#1 CATCAAAAACATCTGGATCAATTCGAGATCGATTACCAGTACTAGCAGAAGGATCAAATT 420 ************************************************************ consensus_2220#0 TGGATTTGAATGTTAATCGATATCCGGATTACACAGATCCTATAGACAGGATGAATAGAT 280 consensus_2220#1 TGGATTTGAATGTTAATCGATATCCGGAT-ACACAGATCCTATAGACAGGATGA------ 473 ***************************** ************************ consensus_2220#0 TTGATCGAGACAGAGAAATACCACTGAATATGATTTCATCTTCTTCTTCATTTATGCAAA 340 consensus_2220#1 ------------------------------------------------------------ consensus_2220#0 CCAATACTTGAATATACAATTAAGAATAATGGTAACAAGCATTCATTTCAGACTGTAAGA 400 consensus_2220#1 ------------------------------------------------------------ consensus_2220#0 AGTAAGAATGTAGAGTACATGATATTATTCATTACCATACAATAGATTTTATTACTAACA 460 consensus_2220#1 ------------------------------------------------------------ consensus_2220#0 CTGCATATTCTACCTTTAGGGTTACTGGTTAATTATTCTGATGTAATCTACTACAAAGTA 520 consensus_2220#1 ------------------------------------------------------------ consensus_2220#0 CTTCAATTCTGCTTTGTTTTCTTTCGTAGTT 551 consensus_2220#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||