These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [GAATCGGCACGAGGGGACTTGTAATTTCCAGTATCGGATCACATTTGGCATATCTTATGCGAATGATTATTTACCTGGTCCGCTATCTCTTTCATCATTCACAACTATTTACCTAAAACCGTATACACGTTGGAGTACTTATGCTATTGGTCTTTTATTGGGCTGGTTCCTCGAAAAACACATCAATATTTTGAAGAATGTGAATTCAAAAACGAAGGTTTTTTGGTTTGATTGGTGTATGCCTGTCATCAATATTCTGTGTATCTACTGTATACGGATTGTATGGATTACTAAGTGGAAAGGTCGAACCATTCACAACGTTTGGAGCTGCAACCTATACAGCATTTCATCGACCTATTTTTATTCTCGGTATTGCAATCGTTGTATCGATGTGTGCTCTTGGTTGTGGTGGTCCGATTCAATGGATTCTCACATTGTCTGTATTCCG] [+] EMBL CD083965 [GAATCGGCACGAGGGGACTTGTAATTTCCAGTATCGGATCACATTTGGCATATCTTATGCGAATGATTATTTACCTGGTCCGCTATCTCTTTCATCATTCACAACTATTTACCTAAAACCGTATACACGTTGGAGTACTTATGCTATTGGTCTTTTATTGGGCTGGTTCCTCGAAAAACACATCAATATTTTGAAGAATGTGAATTCAAAAACGAAGGTTTTTTGGTTTGATTGGTGTATGCCTGTCATCAATATTCTGTGTATCTACTGTATACGGATTGTATGGATTACTAAGTGGAAAGGTCGAACCATTCACAACGTTTGGAGCTGCAACCTATACAGCATTTCATCGACCTATTTTTATTCTCGGTATTGCAATCGTTGTATCGATGTGTGCTCTTGGTTGTGGTGGTCCGATTCAATGGATTCTCACATTGTCTGTATTCCG] consensusID : consensus_2230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [GATGCAAGCCTGGCATCAAATATTCTGGTGAATCAACCGTATACGGATTGTATGGATTACTAAGTGGAAAGGTCGAAGCATTCACAACGTTTGGAGCTGCAACCTTAACAGCATTCCAACGACCCATTTTTATTCACGGATTTGCAAACGTTGTAAGCGAATGGTGGCCCTCGGTTTGGTGGTGCCGTTCAAAGGTTTCGCAACTGGCCGGAATCCGGTTGCCCCAACGTGGACGGAAAACGTCTATAGCTGGAAAACCC] [+] EMBL AI739720 [GATGCAAGCCTGGCATCAAATATTCTGGTGAATCAACCGTATACGGATTGTATGGATTACTAAGTGGAAAGGTCGAAGCATTCACAACGTTTGGAGCTGCAACCTTAACAGCATTCCAACGACCCATTTTTATTCACGGATTTGCAAACGTTGTAAGCGAATGGTGGCCCTCGGTTTGGTGGTGCCGTTCAAAGGTTTCGCAACTGGCCGGAATCCGGTTGCCCCAACGTGGACGGAAAACGTCTATAGCTGGAAAACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2230#0 GAATCGGCACGAGGGGACTTGTAATTTCCAGTATCGGATCACATTTGGCATATCTTATGC 60 consensus_2230#1 ------------------------------------------------------------ consensus_2230#0 GAATGATTATTTACCTGGTCCGCTATCTCTTTCATCATTCACAACTATTTACCTAAAACC 120 consensus_2230#1 ------------------------------------------------------------ consensus_2230#0 GTATACACGTTGGAGTACTTATGCTATTGGTCTTTTATTGGGCTGGTTCCTCGAAAAACA 180 consensus_2230#1 ------------------------------------------------------------ consensus_2230#0 CATCAATATTTTGAAGAATGTGAATTCAAAAACGAAGGTTTTTTGGTTTGATTGGTGTAT 240 consensus_2230#1 -----------------------------------------------------GATGCAA 7 * ** * consensus_2230#0 GCCTGTCATCAA-TATTCTG-TGTATCTACTGTATACGGATTGTATGGATTACTAAGTGG 298 consensus_2230#1 GCCTGGCATCAAATATTCTGGTGAATCAACCGTATACGGATTGTATGGATTACTAAGTGG 67 ***** ****** ******* ** *** ** ***************************** consensus_2230#0 AAAGGTCGAACCATTCACAACGTTTGGAGCTGCAACCTATACAGCATTTCATCGACCTAT 358 consensus_2230#1 AAAGGTCGAAGCATTCACAACGTTTGGAGCTGCAACCTTAACAGCATTCCAACGACCCAT 127 ********** *************************** ******** ** ***** ** consensus_2230#0 TTTTATTCTCGGTATTGCAATCGTTGTAT-CGATGTGTGCTCTTGGTTGTGGTGGTCCGA 417 consensus_2230#1 TTTTATTCACGGATTTGCAAACGTTGTAAGCGAATGGTGGCCCTCGGTTTGGTGGTGCCG 187 ******** *** ****** ******* *** *** * * * * ******* * consensus_2230#0 TTCAATGGATTCTCACATTGTCTGTATTCCG----------------------------- 448 consensus_2230#1 TTCAAAGGTTTCGCA-ACTGGCCGGAATCCGGTTGCCCCAACGTGGACGGAAAACGTCTA 246 ***** ** *** ** * ** * * * **** consensus_2230#0 -------------- consensus_2230#1 TAGCTGGAAAACCC 260 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||