These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [CACGAGGTGATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGTCGAAAGCTGTTAGTGGTAAACGGTAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTGTGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAGTNAGCAGAAAAATATTTATTGCAGAAAATGCAGAAAATCGTCGTTATCAAGAGTATACTGAGAAATTGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTGCTTTCCTAATCACAGAAAATGAGATCAAAGTAACCAATCTTCGAGATGAAATAGGAAAATTAACCACAAAACTAGATGAGGCCCATA] [+] EMBL CD084078 [CACGAGGTGATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGTCGAAAGCTGTTAGTGGTAAACGGTAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTGTGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAGTNAGCAGAAAAATATTTATTGCAGAAAATGCAGAAAATCGTCGTTATCAAGAGTATACTGAGAAATTGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTGCTTTCCTAATCACAGAAAATGAGATCAAAGTAACCAATCTTCGAGATGAAATAGGAAAATTAACCACAAAACTAGATGAGGCCCATA] consensusID : consensus_2239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [ATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGTCGAGAGCTGTTAGTGGTAAACGTAAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTGTGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAAAAATCGTCGTTATCAAGAGTATACTGAGAAATTGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTG] [-] EMBL CD166942 [ATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGTCGAGAGCTGTTAGTGGTAAACGTAAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTGTGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAAAAATCGTCGTTATCAAGAGTATACTGAGAAATTGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2239#0 CACGAGGTGATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGT 60 consensus_2239#1 ---------ATTTCTTCAAAAAACGATTTGTTTTGAGTGAAGAATAGTTCAGAATAATGT 51 *************************************************** consensus_2239#0 CGAAAGCTGTTAGTGGTAAACGGTAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTG 120 consensus_2239#1 CGAGAGCTGTTAGTGGTAAACGTAAAACTAAAGGAAAGAAAACTAAAGCAAAGGACCCTG 111 *** ****************** ************************************ consensus_2239#0 TGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAAGTNAGCA 180 consensus_2239#1 TGAATGAGACATTAGAAAAAACACAGAAAGACGTGAAAAACTTGCGGGAAGAA------- 164 ***************************************************** consensus_2239#0 GAAAAATATTTATTGCAGAAAATGCAGAAAATCGTCGTTATCAAGAGTATACTGAGAAAT 240 consensus_2239#1 ---------------------------AAAATCGTCGTTATCAAGAGTATACTGAGAAAT 197 ********************************* consensus_2239#0 TGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTGCTTTCC 300 consensus_2239#1 TGGAGTCTGTACGAAATTATGATAAATTGAAAAAATCAACACAAAACCATACTG------ 251 ****************************************************** consensus_2239#0 TAATCACAGAAAATGAGATCAAAGTAACCAATCTTCGAGATGAAATAGGAAAATTAACCA 360 consensus_2239#1 ------------------------------------------------------------ consensus_2239#0 CAAAACTAGATGAGGCCCATA 381 consensus_2239#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||