These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [CTCGAGGCAGATTCGGCACGAGGAGTTTGTTTATTAACAAATCATCGAAAGACAATGTACATACAGACAGTAACAACAACAAGACAGAGGTAAGAAACAAAGAAAGAAAATGAAAAAGAAAGATCCAGCCACTTTAAAAAAAATGGCCCAGTTTCCGAGGGAAAGGTTATTCGTAATATTTGATGTTTCTCTTTTACTCTATCTCTTAGTAAAGACAACGTAAATCAGAGAAAAACAAAGCAATTATATCAATTGAAAAAGAGAGAAATGAATTGACAAGATA] [+] EMBL CD084080 [CTCGAGGCAGATTCGGCACGAGGAGTTTGTTTATTAACAAATCATCGAAAGACAATGTACATACAGACAGTAACAACAACAAGACAGAGGTAAGAAACAAAGAAAGAAAATGAAAAAGAAAGATCCAGCCACTTTAAAAAAAATGGCCCAGTTTCCGAGGGAAAGGTTATTCGTAATATTTGATGTTTCTCTTTTACTCTATCTCTTAGTAAAGACAACGTAAATCAGAGAAAAACAAAGCAATTATATCAATTGAAAAAGAGAGAAATGAATTGACAAGATA] consensusID : consensus_2242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [TGTTTTATTTTGTGGAATAATTAGCAATTATATCCAAATATAAGTAGTATATATCTATACACCTAGTGTTATTATTAGTAGTAGGAATAGTTTGTTTATTAACAAATTCATCGAAAGACAATGTACATACAGACAGTAACAACAACAAAGACAGAGGTAAGAGACAAAGAAAGAAAATGAAAAAGAAAGATCCAGCCACTTTCAAAAAAATGGACCAGTTTCCGAGGGAAAGGTTATTCG] [+] EMBL SMAA40595 [TGTTTTATTTTGTGGAATAATTAGCAATTATATCCAAATATAAGTAGTATATATCTATACACCTAGTGTTATTATTAGTAGTAGGAATAGTTTGTTTATTAACAAATTCATCGAAAGACAATGTACATACAGACAGTAACAACAACAAAGACAGAGGTAAGAGACAAAGAAAGAAAATGAAAAAGAAAGATCCAGCCACTTTCAAAAAAATGGACCAGTTTCCGAGGGAAAGGTTATTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2242#0 ------------------------------------------------------------ consensus_2242#1 TGTTTTATTTTGTGGAATAATTAGCAATTATATCCAAATATAAGTAGTATATATCTATAC 60 consensus_2242#0 --CTCGAGGCAGATTCGGCACGAGGA---GTTTGTTTATTAACAAAT-CATCGAAAGACA 54 consensus_2242#1 ACCTAGTGTTATTATTAGTAGTAGGAATAGTTTGTTTATTAACAAATTCATCGAAAGACA 120 ** * * * * * * **** ****************** ************ consensus_2242#0 ATGTACATACAGACAGTAACAACAACAA-GACAGAGGTAAGAAACAAAGAAAGAAAATGA 113 consensus_2242#1 ATGTACATACAGACAGTAACAACAACAAAGACAGAGGTAAGAGACAAAGAAAGAAAATGA 180 **************************** ************* ***************** consensus_2242#0 AAAAGAAAGATCCAGCCACTTTAAAAAAAATGGCCCAGTTTCCGAGGGAAAGGTTATTCG 173 consensus_2242#1 AAAAGAAAGATCCAGCCACTTTCAAAAAAATGGACCAGTTTCCGAGGGAAAGGTTATTCG 240 ********************** ********** ************************** consensus_2242#0 TAATATTTGATGTTTCTCTTTTACTCTATCTCTTAGTAAAGACAACGTAAATCAGAGAAA 233 consensus_2242#1 ------------------------------------------------------------ consensus_2242#0 AACAAAGCAATTATATCAATTGAAAAAGAGAGAAATGAATTGACAAGATA 283 consensus_2242#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||