cluster # 227

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Schistosoma mansoni
cluster # 227 cluster # 227 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_227#0 length = 304 sequences # 1

consensus_227#1 length = 226 sequences # 1

consensusID : consensus_227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [TTTGTATAATCATTCCGAACTCCTGCTGTGGCATAGAAAACAAATTTGTGTTCTGTGACATCAACGTACGGGGTTTTGAATAATACATCTCTGTATATGATATTCAAAAGCAGACCCTCAACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGATTTCCGCCGCCAGCATTTCATTTTCTTTTTCAAGCTTTTCAACCCTGTCTCTAAGTTTCTGATATTCTAACTTAATATTAGATATATAAAAGTCCGAAGCCATAGGAAAAGGATAACCTTGGGGTTTAAAATCTCACA]

[+] EMBL CD156468             [TTTGTATAATCATTCCGAACTCCTGCTGTGGCATAGAAAACAAATTTGTGTTCTGTGACATCAACGTACGGGGTTTTGAATAATACATCTCTGTATATGATATTCAAAAGCAGACCCTCAACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGATTTCCGCCGCCAGCATTTCATTTTCTTTTTCAAGCTTTTCAACCCTGTCTCTAAGTTTCTGATATTCTAACTTAATATTAGATATATAAAAGTCCGAAGCCATAGGAAAAGGATAACCTTGGGGTTTAAAATCTCACA]




>consensus_227#0
TTTGTATAATCATTCCGAACTCCTGCTGTGGCATAGAAAACAAATTTGTGTTCTGTGACA
TCAACGTACGGGGTTTTGAATAATACATCTCTGTATATGATATTCAAAAGCAGACCCTCA
ACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGATTTCCGCCGCCAGC
ATTTCATTTTCTTTTTCAAGCTTTTCAACCCTGTCTCTAAGTTTCTGATATTCTAACTTA
ATATTAGATATATAAAAGTCCGAAGCCATAGGAAAAGGATAACCTTGGGGTTTAAAATCT
CACA

consensusID : consensus_227#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [CAAATTTGTGTCCTGGGACAAGAACGTTCGGTGTTTTGAATAGTACATCACTGTATTTCGTATTCAAAAACAGACCCTCAACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGAGTTCTGTCGTCAGCATTTCATTTTGACAATAACCTTGTATATTTATATATTCTACACCATCCTTTGTATAAACATTCCANACTCCTCCTCTGGCATCGAG]

[+] EMBL CD188481             [CAAATTTGTGTCCTGGGACAAGAACGTTCGGTGTTTTGAATAGTACATCACTGTATTTCGTATTCAAAAACAGACCCTCAACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGAGTTCTGTCGTCAGCATTTCATTTTGACAATAACCTTGTATATTTATATATTCTACACCATCCTTTGTATAAACATTCCANACTCCTCCTCTGGCATCGAG]




>consensus_227#1
CAAATTTGTGTCCTGGGACAAGAACGTTCGGTGTTTTGAATAGTACATCACTGTATTTCG
TATTCAAAAACAGACCCTCAACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGT
GGCCGAGTTCTGTCGTCAGCATTTCATTTTGACAATAACCTTGTATATTTATATATTCTA
CACCATCCTTTGTATAAACATTCCANACTCCTCCTCTGGCATCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_227#0      TTTGTATAATCATTCCGAACTCCTGCTGTGGCATAGAAAACAAATTTGTGTTCTGTGACA 60
consensus_227#1      ----------------------------------------CAAATTTGTGTCCTGGGACA 20
                                                             *********** *** ****

consensus_227#0      TCAACGTACGGGGTTTTGAATAATACATCTCTGTATATGATATTCAAAAGCAGACCCTCA 120
consensus_227#1      AGAACGTTCGGTGTTTTGAATAGTACATCACTGTATTTCGTATTCAAAAACAGACCCTCA 80
                       ***** *** ********** ****** ****** *  ********* **********

consensus_227#0      ACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGATTTCCGCCGCCAGC 180
consensus_227#1      ACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGAGTTCTGTCGTCAGC 140
                     ********************************************** *** * ** ****

consensus_227#0      ATTTCATTTTCTTTTTCAAGCTTTTCAACCCTGTCTCTAAGTTTCTGATATTCTAACTTA 240
consensus_227#1      ATTTCATTTT----GACAA------TAACCTTGTATATTTATATATTCTACACCATCCTT 190
                     **********      ***       **** *** * *   * * *  **  * * * * 

consensus_227#0      ATATTAGATATATAAAAGTCCGAAGCCATAGGAAAAGGATAACCTTGGGGTTTAAAATCT 300
consensus_227#1      TGTATAAACATTCCANACTCCT---CCTCTGGCATCGAG--------------------- 226
                         ** * **   * * ***    **   ** *  *                       

consensus_227#0      CACA 304
consensus_227#1      ----