cluster # 2271

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Schistosoma mansoni
cluster # 2271 cluster # 2271 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2271#0 length = 603 sequences # 1

consensus_2271#1 length = 464 sequences # 1

consensusID : consensus_2271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [CAAAATAAATGATTAAGTTTACTTGGAATGTTGATCAAATATACAAAACCACCACAGGAAGTAAATCGTAATATCAGAGGTAATAGTAATATTTTCTTGAAAAAACAGTGATATGTAAAATTGGTTTGAGCAGTAGGATGTCTTCTTTTTTTTAATGAAAGGCATATGTGGGTAAATTATTTTAAAGAAAGTTAACTGATAATTTAATAAAAGGGATCAACAGAAAGAACTAACTTAAATGTATACAAATTTGCTGAGAAAGGGTAAAATTTGCATTTGAAAATTAATCAAAACAACTGGAAAGTGAGCAGAGACAAAATAAAAAAGTTTGCAAGGAATAAATTATTTTCGAGTACTTTGCACAATTTACTAACGAACACACCGAATGCTTATCTTGAGATAAATGTATACACAAGTCAAATAAGTAATTTATTATCTCTGAAAGATACAGGAATGATTTTAAAATCCAGAAACATCGACTACACTTATATCAGCTTGTTCTTCTTTGGTTTTACACTCCTCCTTGTTCTTCGAAAAATCCTTGAGGTGCCTCTTCCTCTTGAATTAAATCTTGCATGTCAATGTCGTTTAAAGCGCTTTCTT]

[+] EMBL CD145104             [CAAAATAAATGATTAAGTTTACTTGGAATGTTGATCAAATATACAAAACCACCACAGGAAGTAAATCGTAATATCAGAGGTAATAGTAATATTTTCTTGAAAAAACAGTGATATGTAAAATTGGTTTGAGCAGTAGGATGTCTTCTTTTTTTTAATGAAAGGCATATGTGGGTAAATTATTTTAAAGAAAGTTAACTGATAATTTAATAAAAGGGATCAACAGAAAGAACTAACTTAAATGTATACAAATTTGCTGAGAAAGGGTAAAATTTGCATTTGAAAATTAATCAAAACAACTGGAAAGTGAGCAGAGACAAAATAAAAAAGTTTGCAAGGAATAAATTATTTTCGAGTACTTTGCACAATTTACTAACGAACACACCGAATGCTTATCTTGAGATAAATGTATACACAAGTCAAATAAGTAATTTATTATCTCTGAAAGATACAGGAATGATTTTAAAATCCAGAAACATCGACTACACTTATATCAGCTTGTTCTTCTTTGGTTTTACACTCCTCCTTGTTCTTCGAAAAATCCTTGAGGTGCCTCTTCCTCTTGAATTAAATCTTGCATGTCAATGTCGTTTAAAGCGCTTTCTT]




>consensus_2271#0
CAAAATAAATGATTAAGTTTACTTGGAATGTTGATCAAATATACAAAACCACCACAGGAA
GTAAATCGTAATATCAGAGGTAATAGTAATATTTTCTTGAAAAAACAGTGATATGTAAAA
TTGGTTTGAGCAGTAGGATGTCTTCTTTTTTTTAATGAAAGGCATATGTGGGTAAATTAT
TTTAAAGAAAGTTAACTGATAATTTAATAAAAGGGATCAACAGAAAGAACTAACTTAAAT
GTATACAAATTTGCTGAGAAAGGGTAAAATTTGCATTTGAAAATTAATCAAAACAACTGG
AAAGTGAGCAGAGACAAAATAAAAAAGTTTGCAAGGAATAAATTATTTTCGAGTACTTTG
CACAATTTACTAACGAACACACCGAATGCTTATCTTGAGATAAATGTATACACAAGTCAA
ATAAGTAATTTATTATCTCTGAAAGATACAGGAATGATTTTAAAATCCAGAAACATCGAC
TACACTTATATCAGCTTGTTCTTCTTTGGTTTTACACTCCTCCTTGTTCTTCGAAAAATC
CTTGAGGTGCCTCTTCCTCTTGAATTAAATCTTGCATGTCAATGTCGTTTAAAGCGCTTT
CTT

consensusID : consensus_2271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [TTAAAGAAAGTTAACTGATAATTTAATAAAAGGGATCAACAGAAAGAACTAACTTAAATGTATACAAATTTGCTGAGAAAGGGTAAAATTTGCATTTGAAAATTAATCAAAACAACTGGAAAGTGAGCAGAGACAAAATAAAAAAGTTTGCAAGGAATAAATTATTTTCGAGTACTTTGCACAATTTACTAACGAACACACCGAATGCTTATCTTGAGATAAATGTATACACAAGTCAAATAAGTAATTTATTATCTCTGAAAGATACAGGAATGATTTTAAAATCCAGAAACATCGACTACACTTATATCAGCTTGTTCTTCTTTGGTTTTACACTCCTCCTCTTGAATTAAATCTTGCATGTCAATGTCGTTTAAAGCGCTTTCTTTGCCAGTCTCCTGAACTTCTCCTCCTAACATAAACTCATCTAATACGTAGTATGCCTTTTCGAAGTGGAATATAAT]

[-] EMBL CD064664             [TTAAAGAAAGTTAACTGATAATTTAATAAAAGGGATCAACAGAAAGAACTAACTTAAATGTATACAAATTTGCTGAGAAAGGGTAAAATTTGCATTTGAAAATTAATCAAAACAACTGGAAAGTGAGCAGAGACAAAATAAAAAAGTTTGCAAGGAATAAATTATTTTCGAGTACTTTGCACAATTTACTAACGAACACACCGAATGCTTATCTTGAGATAAATGTATACACAAGTCAAATAAGTAATTTATTATCTCTGAAAGATACAGGAATGATTTTAAAATCCAGAAACATCGACTACACTTATATCAGCTTGTTCTTCTTTGGTTTTACACTCCTCCTCTTGAATTAAATCTTGCATGTCAATGTCGTTTAAAGCGCTTTCTTTGCCAGTCTCCTGAACTTCTCCTCCTAACATAAACTCATCTAATACGTAGTATGCCTTTTCGAAGTGGAATATAAT]




>consensus_2271#1
TTAAAGAAAGTTAACTGATAATTTAATAAAAGGGATCAACAGAAAGAACTAACTTAAATG
TATACAAATTTGCTGAGAAAGGGTAAAATTTGCATTTGAAAATTAATCAAAACAACTGGA
AAGTGAGCAGAGACAAAATAAAAAAGTTTGCAAGGAATAAATTATTTTCGAGTACTTTGC
ACAATTTACTAACGAACACACCGAATGCTTATCTTGAGATAAATGTATACACAAGTCAAA
TAAGTAATTTATTATCTCTGAAAGATACAGGAATGATTTTAAAATCCAGAAACATCGACT
ACACTTATATCAGCTTGTTCTTCTTTGGTTTTACACTCCTCCTCTTGAATTAAATCTTGC
ATGTCAATGTCGTTTAAAGCGCTTTCTTTGCCAGTCTCCTGAACTTCTCCTCCTAACATA
AACTCATCTAATACGTAGTATGCCTTTTCGAAGTGGAATATAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2271#0      CAAAATAAATGATTAAGTTTACTTGGAATGTTGATCAAATATACAAAACCACCACAGGAA 60
consensus_2271#1      ------------------------------------------------------------
                                                                                  

consensus_2271#0      GTAAATCGTAATATCAGAGGTAATAGTAATATTTTCTTGAAAAAACAGTGATATGTAAAA 120
consensus_2271#1      ------------------------------------------------------------
                                                                                  

consensus_2271#0      TTGGTTTGAGCAGTAGGATGTCTTCTTTTTTTTAATGAAAGGCATATGTGGGTAAATTAT 180
consensus_2271#1      ------------------------------------------------------------
                                                                                  

consensus_2271#0      TTTAAAGAAAGTTAACTGATAATTTAATAAAAGGGATCAACAGAAAGAACTAACTTAAAT 240
consensus_2271#1      -TTAAAGAAAGTTAACTGATAATTTAATAAAAGGGATCAACAGAAAGAACTAACTTAAAT 59
                       ***********************************************************

consensus_2271#0      GTATACAAATTTGCTGAGAAAGGGTAAAATTTGCATTTGAAAATTAATCAAAACAACTGG 300
consensus_2271#1      GTATACAAATTTGCTGAGAAAGGGTAAAATTTGCATTTGAAAATTAATCAAAACAACTGG 119
                      ************************************************************

consensus_2271#0      AAAGTGAGCAGAGACAAAATAAAAAAGTTTGCAAGGAATAAATTATTTTCGAGTACTTTG 360
consensus_2271#1      AAAGTGAGCAGAGACAAAATAAAAAAGTTTGCAAGGAATAAATTATTTTCGAGTACTTTG 179
                      ************************************************************

consensus_2271#0      CACAATTTACTAACGAACACACCGAATGCTTATCTTGAGATAAATGTATACACAAGTCAA 420
consensus_2271#1      CACAATTTACTAACGAACACACCGAATGCTTATCTTGAGATAAATGTATACACAAGTCAA 239
                      ************************************************************

consensus_2271#0      ATAAGTAATTTATTATCTCTGAAAGATACAGGAATGATTTTAAAATCCAGAAACATCGAC 480
consensus_2271#1      ATAAGTAATTTATTATCTCTGAAAGATACAGGAATGATTTTAAAATCCAGAAACATCGAC 299
                      ************************************************************

consensus_2271#0      TACACTTATATCAGCTTGTTCTTCTTTGGTTTTACACTCCTCCTTGT--------TCTTC 532
consensus_2271#1      TACACTTATATCAGCTTGTTCTTCTTTGGTTTTACACTCCTCCTCTTGAATTAAATCTTG 359
                      ********************************************  *        **** 

consensus_2271#0      GA----AAAATC-CTTGAGGTGCCTCTTC-------CTCTTGAATTAAATCTTGCATGTC 580
consensus_2271#1      CATGTCAATGTCGTTTAAAGCGCTTTCTTTGCCAGTCTCCTGAACTTCTCCTCCTAACAT 419
                       *    **  **  ** * * ** *  *        *** **** *    **   *    

consensus_2271#0      AATGTCGTTTAAAGCGCTTTCTT---------------------- 603
consensus_2271#1      AAACTCATCTAATACGTAGTATGCCTTTTCGAAGTGGAATATAAT 464
                      **  ** * ***  **   * *