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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[TCCGGGAGTGGCACCAACGATTAAGATCAGGCGTATCTTAGACATGGTCGGATGAAACTTGTCGACTCAATCGTTGTCAGATGGCTGTCAGAGAATTCTATCGATATCAGGCAAATATCTTATGAATCGTGAGTGCACGTGGAACACCGGAAAAATCTCGGAACACATTGTAACCAACGATACCATGGTCTCGACCGCGGCAGATATTAGACAGCAACAACTATCGTGACGCTTAACTTTGCCGTTGACATTCGGTTCAAATAAACGATGATGAATTTCTTGAGCGTAAGTCGCATCACCAGCATAACCATAATCATACAAAGCGCCACAAATAACCGAATCGATACCATGACTCGAGGAATCATAAGACAGTTTACATTTGGCACTACCATCACGTCACCAAATTTGATCGATATAATTCACCATTTGGTTGACAACGGGTCAAAAGATCTCGAACTAAGGTATGTAAACGGAATGCTCCTGTTGCATCTTCATTAAAGATAACACCAGGAACATTCGGATTATATTGACTGAATAAACCTTGATGACCGGTGTATCGTTGTGCTGCATCTGGACCGATGAGTACTGGAAGCCAATCTTCATAAATATAGGCGTGGATGTAAAGCTGATAAGA]
[+] EMBL CD084525 [TCCGGGAGTGGCACCAACGATTAAGATCAGGCGTATCTTAGACATGGTCGGATGAAACTTGTCGACTCAATCGTTGTCAGATGGCTGTCAGAGAATTCTATCGATATCAGGCAAATATCTTATGAATCGTGAGTGCACGTGGAACACCGGAAAAATCTCGGAACACATTGTAACCAACGATACCATGGTCTCGACCGCGGCAGATATTAGACAGCAACAACTATCGTGACGCTTAACTTTGCCGTTGACATTCGGTTCAAATAAACGATGATGAATTTCTTGAGCGTAAGTCGCATCACCAGCATAACCATAATCATACAAAGCGCCACAAATAACCGAATCGATACCATGACTCGAGGAATCATAAGACAGTTTACATTTGGCACTACCATCACGTCACCAAATTTGATCGATATAATTCACCATTTGGTTGACAACGGGTCAAAAGATCTCGAACTAAGGTATGTAAACGGAATGCTCCTGTTGCATCTTCATTAAAGATAACACCAGGAACATTCGGATTATATTGACTGAATAAACCTTGATGACCGGTGTATCGTTGTGCTGCATCTGGACCGATGAGTACTGGAAGCCAATCTTCATAAATATAGGCGTGGATGTAAAGCTGATAAGA]
consensusID : consensus_2276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[GGACTATTACCGTGAGATGTGCACCGAACGTTTGCACCACCAATCCATACTCATTGACTAGTGAACGGATGAAACTCTAGCGACTCCAACAGTTTACACATGTGCTGTCTGCGATATCATAGATATCACGCAAATGCTTAACAAGTGCGACCGTGCACGTGGAATACCCCAAAGATATCGGAACACATTGTAACCAACGACACCATGATCTCGTCCGCGGCAGATATTAGGCAGCGACGCTATCCTGACGCTTAACTAAGCGGTTGACATTCGGTACAAATAAAAGATGATCAATGTCTAGAGCGTACATAGGCCCACCAGCATAACCATAATCATACACAGCGCCACAAATAATCCACTCGATGCCATAGCACTCGTGGCTATCATAATGACCAGTATAGCATATATGGGCATCTAGCGCACTCACGGCCACGCTAATGAACACCTATAAATTCACCATGTGGTGGACACGGGTGAAAAGATCTCGAACTACGGTATGTAAACGGAATGCTCCTGTTGCAGCTTCATTAAAGATAACACCAGGAACATTCGGATTATATTGACTGAATAAACCTTGATGACCGGTGTATCGTTGTGCTGTATCTGGACCGATGAGTACTGGACA]
[+] EMBL CD084526 [GGACTATTACCGTGAGATGTGCACCGAACGTTTGCACCACCAATCCATACTCATTGACTAGTGAACGGATGAAACTCTAGCGACTCCAACAGTTTACACATGTGCTGTCTGCGATATCATAGATATCACGCAAATGCTTAACAAGTGCGACCGTGCACGTGGAATACCCCAAAGATATCGGAACACATTGTAACCAACGACACCATGATCTCGTCCGCGGCAGATATTAGGCAGCGACGCTATCCTGACGCTTAACTAAGCGGTTGACATTCGGTACAAATAAAAGATGATCAATGTCTAGAGCGTACATAGGCCCACCAGCATAACCATAATCATACACAGCGCCACAAATAATCCACTCGATGCCATAGCACTCGTGGCTATCATAATGACCAGTATAGCATATATGGGCATCTAGCGCACTCACGGCCACGCTAATGAACACCTATAAATTCACCATGTGGTGGACACGGGTGAAAAGATCTCGAACTACGGTATGTAAACGGAATGCTCCTGTTGCAGCTTCATTAAAGATAACACCAGGAACATTCGGATTATATTGACTGAATAAACCTTGATGACCGGTGTATCGTTGTGCTGTATCTGGACCGATGAGTACTGGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2276#0 ----------TCCGGGAGTGGCACCAACGATTAAGATCAGG----CGTA-TCTTAGAC-- 43
consensus_2276#1 GGACTATTACCGTGAGATGTGCACCGAACGTTTGCACCACCAATCCATACTCATTGACTA 60
* ** ***** * ** * ** * ** ** * ***
consensus_2276#0 ATGGTCGGATGAAACT-TGTCGACTC-AATCGTTGTCAGATG-GCTGTCAGAGAATTCTA 100
consensus_2276#1 GTGAACGGATGAAACTCTAGCGACTCCAACAGTTTACACATGTGCTGTCTGCGATATC-A 119
** *********** * ****** ** *** ** *** ****** * ** ** *
consensus_2276#0 TCGATATCAGGCAAATATCTTATGAAT-CGTGAGTGCACGTGGAACACCGGAAAAATCTC 159
consensus_2276#1 TAGATATCACGCAAATGCTTAACAAGTGCGACCGTGCACGTGGAATACCCCAAAGATATC 179
* ******* ****** * * * * ** ************ *** *** ** **
consensus_2276#0 GGAACACATTGTAACCAACGATACCATGGTCTCGACCGCGGCAGATATTAGACAGCAACA 219
consensus_2276#1 GGAACACATTGTAACCAACGACACCATGATCTCGTCCGCGGCAGATATTAGGCAGCGACG 239
********************* ****** ***** **************** **** **
consensus_2276#0 ACTATCGTGACGCTTAACTTTGCCGTTGACATTCGGTTCAAATAAACGATGATGAATTTC 279
consensus_2276#1 -CTATCCTGACGCTTAACTAAGCGGTTGACATTCGGTACAAATAAAAGATGATCAATGTC 298
***** ************ ** ************* ******** ****** *** **
consensus_2276#0 TTGAGCGTAAGTCGCATCACCAGCATAACCATAATCATACAAAGCGCCACAAATAACCGA 339
consensus_2276#1 TAGAGCGTACATAGGCCCACCAGCATAACCATAATCATACACAGCGCCACAAATAATCCA 358
* ******* * * ************************ ************** * *
consensus_2276#0 ATCGATACCATG--ACTCGAGGA-ATCATAAGA--CAGTTTA-----------CATTTGG 383
consensus_2276#1 CTCGATGCCATAGCACTCGTGGCTATCATAATGACCAGTATAGCATATATGGGCATCTAG 418
***** **** ***** ** ******* **** ** *** * *
consensus_2276#0 CACTACCATCACGTCACCAAATTTGATCGATATAATTCACCATTTGGTTGACAACGGGTC 443
consensus_2276#1 CGCACTCACGGCCACGCTAATGAACACCTATA-AATTCACCATGTGGTGGACA-CGGGTG 476
* * ** * * * ** * * *** ********** **** **** *****
consensus_2276#0 AAAAGATCTCGAACTAAGGTATGTAAACGGAATGCTCCTGTTGCATCTTCATTAAAGATA 503
consensus_2276#1 AAAAGATCTCGAACTACGGTATGTAAACGGAATGCTCCTGTTGCAGCTTCATTAAAGATA 536
**************** **************************** **************
consensus_2276#0 ACACCAGGAACATTCGGATTATATTGACTGAATAAACCTTGATGACCGGTGTATCGTTGT 563
consensus_2276#1 ACACCAGGAACATTCGGATTATATTGACTGAATAAACCTTGATGACCGGTGTATCGTTGT 596
************************************************************
consensus_2276#0 GCTGCATCTGGACCGATGAGTACTGGAAGCCAATCTTCATAAATATAGGCGTGGATGTAA 623
consensus_2276#1 GCTGTATCTGGACCGATGAGTACTGGACA------------------------------- 625
**** **********************
consensus_2276#0 AGCTGATAAGA 634
consensus_2276#1 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||