These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [AATAAAAATAAGGATTTATTCCTCCCATACCATCTTAAACCGTGAAGTGGCCAGAGAAGAACAACAGTTTGGTTATTATGCACATATTGAAACTTAATATCGTAAACTCTTACTGTTATCAGGCCTTGACGAATCTCTTTGAAATCATGATCTAAAAGACTAACACTAAAGCACATAGATTTTCGTTTGTTGAACATGGATTCACTGACTGATTGTAGGAACTGAATTAGAGGCTTAGATGGATTAGAAGGTAGATGAGCTTTTGCTTTAATTCTCGTCTTGTATTCGTCGAACAGACACTGGAGATCATCTGATTTATTAACGCTATTAATGAGGCCCATTTCGATGAATAATCACAGGGGTT] [+] EMBL CD186949 [AATAAAAATAAGGATTTATTCCTCCCATACCATCTTAAACCGTGAAGTGGCCAGAGAAGAACAACAGTTTGGTTATTATGCACATATTGAAACTTAATATCGTAAACTCTTACTGTTATCAGGCCTTGACGAATCTCTTTGAAATCATGATCTAAAAGACTAACACTAAAGCACATAGATTTTCGTTTGTTGAACATGGATTCACTGACTGATTGTAGGAACTGAATTAGAGGCTTAGATGGATTAGAAGGTAGATGAGCTTTTGCTTTAATTCTCGTCTTGTATTCGTCGAACAGACACTGGAGATCATCTGATTTATTAACGCTATTAATGAGGCCCATTTCGATGAATAATCACAGGGGTT] consensusID : consensus_2295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [GCCTCATTAATAGCGTTAATAAATCAGATGATCTCCAGTGTTTGTTCGACGAATACAAGACGAGAATTATAGTTAGACTTTTCAGTGCACCACTCATCAATTATATGTGAATTCATTTTGTTGCGTAATATTTTCACTAAACTCACTTCATAATTATCATGTAAACAAATTTTAAGATTTCCATCAGCTGTAAGACGTAAACGTGAACATCCAGCACAAAAATTCTCAGTCATTGAAGTGATGAAACCAATCTTACCTAACCATCCTGATACTTGAAAATGCTTTACAAAAAAAAGAAAATATTAAGAACTAAATCAGAGAATATTAACAGGGAAATTGTTTTCTATCACTG] [+] EMBL CD064815 [GCCTCATTAATAGCGTTAATAAATCAGATGATCTCCAGTGTTTGTTCGACGAATACAAGACGAGAATTATAGTTAGACTTTTCAGTGCACCACTCATCAATTATATGTGAATTCATTTTGTTGCGTAATATTTTCACTAAACTCACTTCATAATTATCATGTAAACAAATTTTAAGATTTCCATCAGCTGTAAGACGTAAACGTGAACATCCAGCACAAAAATTCTCAGTCATTGAAGTGATGAAACCAATCTTACCTAACCATCCTGATACTTGAAAATGCTTTACAAAAAAAAGAAAATATTAAGAACTAAATCAGAGAATATTAACAGGGAAATTGTTTTCTATCACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2295#0 --------AATAAAAATAAGGATTTATTCCTCCCATACCATCTTAAACCGTGAAGTGGCC 52 consensus_2295#1 GCCTCATTAATAGCGTTAATAAATCAGATGATC--TCCAGTGTTTGTTCGACGAATA-CA 57 **** *** * * * * * * * ** ** * * * consensus_2295#0 AGAGAAGAACAACAGTTTGGTTATTATGCACAT-ATTGAAACTTAATATCGTAAACTCTT 111 consensus_2295#1 AGACGAGAATTATAGTTAGACTTTTCAGTGCACCACTCATCAATTATAT-GTGAATTCAT 116 *** **** * **** * * ** * ** * * * * **** ** ** ** * consensus_2295#0 ACTGTTA--TCAGGCCTTGACGAATCTC--TTTGAAATCATGATCTAAAAGACTAACACT 167 consensus_2295#1 TTTGTTGCGTAATATTTTCACTAAACTCACTTCATAATTATCATGTAAA---CAAATTTT 173 **** * * ** ** ** *** ** *** ** ** **** * ** * consensus_2295#0 AAAGCACATAGATTTTCGTTTGTTGAACATGGATTCACTGACTGATTGTAGGAA--CTGA 225 consensus_2295#1 AAGATTTCCA-----TCAGCTGTAAGACGTAAACGTGAACATCCAGCACAAAAATTCTCA 228 ** * ** *** ** * * * * * ** ** * consensus_2295#0 ATTAGAGGCTTAGATGGATTAGAAGGTAGATGAGCTTTTGCTTTAATTCTCGTCTTGTAT 285 consensus_2295#1 GTCATTGAAGT-GATGAAACCAATCTTACCTAACCATC--CTGATACTTGAAAATGCTTT 285 * * * * **** * * ** * * * * ** * * * * * consensus_2295#0 TCGTCGAACAGACACTGGAGATCATCTGATTTATTAACGCTATTAATGAGGCCCATTTCG 345 consensus_2295#1 ACAAAAAAAAGAAAATATTAAGAACTAAATCAGAGAATATTAACAGGGAAATTGTTTTCT 345 * ** *** * * * * ** ** ** * ** **** consensus_2295#0 ATGAATAATCACAGGGGTT 364 consensus_2295#1 ATCACTG------------ 352 ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||