cluster # 2300

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Schistosoma mansoni
cluster # 2300 cluster # 2300 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2300#0 length = 615 sequences # 1

consensus_2300#1 length = 520 sequences # 1

consensusID : consensus_2300#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [TAGTACTTCAATGAAATTAAATTTAATATGATGAAAAACAATTTTCTGTTCTTTACCAGATACATCATGAATTGGCTCGTTTACATGCTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAGTAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATGAATTAAATCTCCCACAAAATGTTAATTGGGAATCAGTTTTATTTCACTTAGAACAATCAGCTAAACTTGGCTGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGGTTGATGGCCCATTATCGGAATGTCCCATTAAAGTTAGTCTATTCACTGTTCCAGTTTTATCATTGAAAATAAGATTTCAAGAATAAGTAGAGTAGTTTTTTTTTAAAAATATTCCCAAAATATCTCCCTTCAAGATAATATCAATGGTAAATCAAGTAACCAGGATAATAATAGCTTCTTACATGCAAGCTTTAGTTGGCAATCTAGTCATTTAAAACGAGCGCCTAACCTCGAGATCATTGTAGCCGGAATCCAATGGTATAAAAGTCTAGCTTGGCCTCACCACTT]

[+] EMBL CD084958             [TAGTACTTCAATGAAATTAAATTTAATATGATGAAAAACAATTTTCTGTTCTTTACCAGATACATCATGAATTGGCTCGTTTACATGCTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAGTAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATGAATTAAATCTCCCACAAAATGTTAATTGGGAATCAGTTTTATTTCACTTAGAACAATCAGCTAAACTTGGCTGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGGTTGATGGCCCATTATCGGAATGTCCCATTAAAGTTAGTCTATTCACTGTTCCAGTTTTATCATTGAAAATAAGATTTCAAGAATAAGTAGAGTAGTTTTTTTTTAAAAATATTCCCAAAATATCTCCCTTCAAGATAATATCAATGGTAAATCAAGTAACCAGGATAATAATAGCTTCTTACATGCAAGCTTTAGTTGGCAATCTAGTCATTTAAAACGAGCGCCTAACCTCGAGATCATTGTAGCCGGAATCCAATGGTATAAAAGTCTAGCTTGGCCTCACCACTT]




>consensus_2300#0
TAGTACTTCAATGAAATTAAATTTAATATGATGAAAAACAATTTTCTGTTCTTTACCAGA
TACATCATGAATTGGCTCGTTTACATGCTTCTGGTCGTTTAGCTTTATTACATCAAACCG
GTTATTATCAATTTAAGTGCAATGAAGTAAAGAACCATCAACCTTCTATAGATATTGAGC
AAGAGTTAAATGGAAATCAACTGAATGAATTAAATCTCCCACAAAATGTTAATTGGGAAT
CAGTTTTATTTCACTTAGAACAATCAGCTAAACTTGGCTGTTTAGATGCTATTCAATGTT
TAGCTCAATATTATTTGAATTTAATGGTTGATGGCCCATTATCGGAATGTCCCATTAAAG
TTAGTCTATTCACTGTTCCAGTTTTATCATTGAAAATAAGATTTCAAGAATAAGTAGAGT
AGTTTTTTTTTAAAAATATTCCCAAAATATCTCCCTTCAAGATAATATCAATGGTAAATC
AAGTAACCAGGATAATAATAGCTTCTTACATGCAAGCTTTAGTTGGCAATCTAGTCATTT
AAAACGAGCGCCTAACCTCGAGATCATTGTAGCCGGAATCCAATGGTATAAAAGTCTAGC
TTGGCCTCACCACTT

consensusID : consensus_2300#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [TCAAAGCACAAAAAAGTCTTATTAGTGACCCTGGTTGTGATCCAGTATGTTCAGATTTGGATCAGTCAAATTCTCATTTGAATTCCACAGAAAATTCACAACAGCTCAGTAAAGAAGCTGAACTAATTGAATTTTTCCGTTCACATCAAGCTGGTCATCGAAGCAGTTCCATTGCAGCTTTACATGGTGCTGATACTGTGATTTTAGGTTTAATACATCATGAATTGGCTCGTTTACATGCTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAGTAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATGAATTAAATCTCCCACAAAATGTTAATTGGGAATCAGCTTTATTTCCCTTAGAACAATCAGCTAAACTTGGCCGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGGTTGATGGCCCATTATCGGAATGTCCCATTAAACCTGATCC]

[+] EMBL CD159131             [TCAAAGCACAAAAAAGTCTTATTAGTGACCCTGGTTGTGATCCAGTATGTTCAGATTTGGATCAGTCAAATTCTCATTTGAATTCCACAGAAAATTCACAACAGCTCAGTAAAGAAGCTGAACTAATTGAATTTTTCCGTTCACATCAAGCTGGTCATCGAAGCAGTTCCATTGCAGCTTTACATGGTGCTGATACTGTGATTTTAGGTTTAATACATCATGAATTGGCTCGTTTACATGCTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAGTAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATGAATTAAATCTCCCACAAAATGTTAATTGGGAATCAGCTTTATTTCCCTTAGAACAATCAGCTAAACTTGGCCGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGGTTGATGGCCCATTATCGGAATGTCCCATTAAACCTGATCC]




>consensus_2300#1
TCAAAGCACAAAAAAGTCTTATTAGTGACCCTGGTTGTGATCCAGTATGTTCAGATTTGG
ATCAGTCAAATTCTCATTTGAATTCCACAGAAAATTCACAACAGCTCAGTAAAGAAGCTG
AACTAATTGAATTTTTCCGTTCACATCAAGCTGGTCATCGAAGCAGTTCCATTGCAGCTT
TACATGGTGCTGATACTGTGATTTTAGGTTTAATACATCATGAATTGGCTCGTTTACATG
CTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAG
TAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATG
AATTAAATCTCCCACAAAATGTTAATTGGGAATCAGCTTTATTTCCCTTAGAACAATCAG
CTAAACTTGGCCGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGG
TTGATGGCCCATTATCGGAATGTCCCATTAAACCTGATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2300#0      ------------------------------------------------------------
consensus_2300#1      TCAAAGCACAAAAAAGTCTTATTAGTGACCCTGGTTGTGATCCAGTATGTTCAGATTTGG 60
                                                                                  

consensus_2300#0      ------------------------------------------------------------
consensus_2300#1      ATCAGTCAAATTCTCATTTGAATTCCACAGAAAATTCACAACAGCTCAGTAAAGAAGCTG 120
                                                                                  

consensus_2300#0      -------------------------------TAGTACTTCAATGAAATTAAATTTAATAT 29
consensus_2300#1      AACTAATTGAATTTTTCCGTTCACATCAAGCTGGTCATCGAAGCAGTTCCATTGCAGCTT 180
                                                     * **  *  **  *  *  * *  *   *

consensus_2300#0      GATGAAAAAC-AATTTTCTGTTCTTTA-CCAGATACATCATGAATTGGCTCGTTTACATG 87
consensus_2300#1      TACATGGTGCTGATACTGTGATTTTAGGTTTAATACATCATGAATTGGCTCGTTTACATG 240
                       *       *  **  * ** * **       ****************************

consensus_2300#0      CTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAG 147
consensus_2300#1      CTTCTGGTCGTTTAGCTTTATTACATCAAACCGGTTATTATCAATTTAAGTGCAATGAAG 300
                      ************************************************************

consensus_2300#0      TAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATG 207
consensus_2300#1      TAAAGAACCATCAACCTTCTATAGATATTGAGCAAGAGTTAAATGGAAATCAACTGAATG 360
                      ************************************************************

consensus_2300#0      AATTAAATCTCCCACAAAATGTTAATTGGGAATCAGTTTTATTTCACTTAGAACAATCAG 267
consensus_2300#1      AATTAAATCTCCCACAAAATGTTAATTGGGAATCAGCTTTATTTCCCTTAGAACAATCAG 420
                      ************************************ ******** **************

consensus_2300#0      CTAAACTTGGCTGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGG 327
consensus_2300#1      CTAAACTTGGCCGTTTAGATGCTATTCAATGTTTAGCTCAATATTATTTGAATTTAATGG 480
                      *********** ************************************************

consensus_2300#0      TTGATGGCCCATTATCGGAATGTCCCATTAAAGTTAGTCTATTCACTGTTCCAGTTTTAT 387
consensus_2300#1      TTGATGGCCCATTATCGGAATGTCCCATTAAACCTGATCC-------------------- 520
                      ********************************  *  **                     

consensus_2300#0      CATTGAAAATAAGATTTCAAGAATAAGTAGAGTAGTTTTTTTTTAAAAATATTCCCAAAA 447
consensus_2300#1      ------------------------------------------------------------
                                                                                  

consensus_2300#0      TATCTCCCTTCAAGATAATATCAATGGTAAATCAAGTAACCAGGATAATAATAGCTTCTT 507
consensus_2300#1      ------------------------------------------------------------
                                                                                  

consensus_2300#0      ACATGCAAGCTTTAGTTGGCAATCTAGTCATTTAAAACGAGCGCCTAACCTCGAGATCAT 567
consensus_2300#1      ------------------------------------------------------------
                                                                                  

consensus_2300#0      TGTAGCCGGAATCCAATGGTATAAAAGTCTAGCTTGGCCTCACCACTT 615
consensus_2300#1      ------------------------------------------------