cluster # 2314

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2314 cluster # 2314 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2314#0 length = 594 sequences # 1

consensus_2314#1 length = 421 sequences # 1

consensusID : consensus_2314#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [ACTAATAGCTGGTAAGCACACAAACATAATAATTCTCTGCAAAACTTAGCTGCCAGTTGATCTACTCTATGAGGAACAATGCCAAAAGACATAACAGCGGGTAACCTTGACGATGTTGATCGTACCAACATTTAACAGTTTTTTATCTAGGTTCCTGGAGAATGGGGACAACAATCCAGCCTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAACATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTCAAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCAGTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAAAATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTGAATGGGACATTTACGCGTAAGGTCAACTCTGATCACATTACACTTAGGCCGATGAAGTTTTTTAGGGGCAGTGTCAAAACCAGTGTCTCAACAGACAACTACCATCATCAGCGA]

[+] EMBL CD064941             [ACTAATAGCTGGTAAGCACACAAACATAATAATTCTCTGCAAAACTTAGCTGCCAGTTGATCTACTCTATGAGGAACAATGCCAAAAGACATAACAGCGGGTAACCTTGACGATGTTGATCGTACCAACATTTAACAGTTTTTTATCTAGGTTCCTGGAGAATGGGGACAACAATCCAGCCTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAACATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTCAAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCAGTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAAAATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTGAATGGGACATTTACGCGTAAGGTCAACTCTGATCACATTACACTTAGGCCGATGAAGTTTTTTAGGGGCAGTGTCAAAACCAGTGTCTCAACAGACAACTACCATCATCAGCGA]




>consensus_2314#0
ACTAATAGCTGGTAAGCACACAAACATAATAATTCTCTGCAAAACTTAGCTGCCAGTTGA
TCTACTCTATGAGGAACAATGCCAAAAGACATAACAGCGGGTAACCTTGACGATGTTGAT
CGTACCAACATTTAACAGTTTTTTATCTAGGTTCCTGGAGAATGGGGACAACAATCCAGC
CTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAA
CATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTC
AAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCA
GTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAA
AATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTG
AATGGGACATTTACGCGTAAGGTCAACTCTGATCACATTACACTTAGGCCGATGAAGTTT
TTTAGGGGCAGTGTCAAAACCAGTGTCTCAACAGACAACTACCATCATCAGCGA

consensusID : consensus_2314#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [ACATTTAACAGTTTTTTAACTAGGTTCCTGGAGAATGGGGACAACAATCCAGCCTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAACATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTCAAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCAGTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAAAATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTGAATGGGAGGCCAGTGATGTCAACAGCTGGGCACGGAATANAAGTCGGATCCTTTCAAAGTCGTCCGCC]

[+] EMBL CD202205             [ACATTTAACAGTTTTTTAACTAGGTTCCTGGAGAATGGGGACAACAATCCAGCCTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAACATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTCAAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCAGTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAAAATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTGAATGGGAGGCCAGTGATGTCAACAGCTGGGCACGGAATANAAGTCGGATCCTTTCAAAGTCGTCCGCC]




>consensus_2314#1
ACATTTAACAGTTTTTTAACTAGGTTCCTGGAGAATGGGGACAACAATCCAGCCTTTCCA
AGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAACATTATC
AGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTCAAGCAGA
TAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCAGTTAGTT
GGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAAAATACAT
GATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTGAATGGGA
GGCCAGTGATGTCAACAGCTGGGCACGGAATANAAGTCGGATCCTTTCAAAGTCGTCCGC
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2314#0      ACTAATAGCTGGTAAGCACACAAACATAATAATTCTCTGCAAAACTTAGCTGCCAGTTGA 60
consensus_2314#1      ------------------------------------------------------------
                                                                                  

consensus_2314#0      TCTACTCTATGAGGAACAATGCCAAAAGACATAACAGCGGGTAACCTTGACGATGTTGAT 120
consensus_2314#1      ------------------------------------------------------------
                                                                                  

consensus_2314#0      CGTACCAACATTTAACAGTTTTTTATCTAGGTTCCTGGAGAATGGGGACAACAATCCAGC 180
consensus_2314#1      -------ACATTTAACAGTTTTTTAACTAGGTTCCTGGAGAATGGGGACAACAATCCAGC 53
                             ****************** **********************************

consensus_2314#0      CTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAA 240
consensus_2314#1      CTTTCCAAGTGTAAAAATGTGTTTTGCTCTGAGACAGATCTTCAAGAGCAACTAGTTCAA 113
                      ************************************************************

consensus_2314#0      CATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTC 300
consensus_2314#1      CATTATCAGTCAACAAGCGTGGAAGTTTGGAGTCTATGTGACTTGGATAGTTCTATCCTC 173
                      ************************************************************

consensus_2314#0      AAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCA 360
consensus_2314#1      AAGCAGATAGTCAGTGATAAGCTGTTTAGAGTTTCAACGGCTTCAAGTGTAGTGAATTCA 233
                      ************************************************************

consensus_2314#0      GTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAA 420
consensus_2314#1      GTTAGTTGGCTGCATTCGTAATTCGATGAATTTTCTTGGCGAATTTAGAATTCGTACCAA 293
                      ************************************************************

consensus_2314#0      AATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTG 480
consensus_2314#1      AATACATGATCTGTAAGGACTAGCTTTTGCCATGTCAGTAGAACGTTAGTGCATTTATTG 353
                      ************************************************************

consensus_2314#0      AATGGGACATTTACGCGTAAGGTCAACT-CTGATCACATTACACTTAGGCCGATGAAGTT 539
consensus_2314#1      AATGGGAGGCC----AGTGATGTCAACAGCTGGGCACGGAATAN--AAGTCGG---ATCC 404
                      *******         ** * ******  ***  ***   * *   * * **    *   

consensus_2314#0      TTTTAGGGGCAGTGTCAAAACCAGTGTCTCAACAGACAACTACCATCATCAGCGA 594
consensus_2314#1      TTTCAAAGTCGTCCGCC-------------------------------------- 421
                      *** *  * *     *