These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [ATGGTTTAATTAAAACGGTATGGTCCAGGATTTCCCGGTCATCGAATTTAGTGGCTGCCTGTGAATATGTCAATGATCCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTATCCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTGATACTCAAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGCAACATCACCTTTTCTGGGCCGAGTCAGTTT] [+] EMBL CD111399 [ATGGTTTAATTAAAACGGTATGGTCCAGGATTTCCCGGTCATCGAATTTAGTGGCTGCCTGTGAATATGTCAATGATCCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTATCCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTGATACTCAAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGCAACATCACCTTTTCTGGGCCGAGTCAGTTT] consensusID : consensus_2347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [TCAGGGAGATTTTCACCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTATCCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTGATACTCTAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGCTACATCACCTTTTCTGGGCCGAGTCAG] [-] EMBL CD065154 [TCAGGGAGATTTTCACCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTATCCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTGATACTCTAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGCTACATCACCTTTTCTGGGCCGAGTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2347#0 ATGGTTTAATTAAAACGGTATGGTCCAGGATTTCCCGGTCATCGAATTTAGTGGCTGCCT 60 consensus_2347#1 ---------------------------------------------------------TCA 3 * consensus_2347#0 GTGAATATGTCAATGATCCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTAT 120 consensus_2347#1 GGGAGATTTTCA-----CCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTAT 58 * ** * *** ******************************************* consensus_2347#0 CCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTG 180 consensus_2347#1 CCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTG 118 ************************************************************ consensus_2347#0 ATACTCAAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGC 240 consensus_2347#1 ATACTCTAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGC 178 ****** ***************************************************** consensus_2347#0 AACATCACCTTTTCTGGGCCGAGTCAGTTT 270 consensus_2347#1 TACATCACCTTTTCTGGGCCGAGTCAG--- 205 ************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||