These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [ACCGCCAACATTGAAGAACAACTAAAACAGGTGGGTAAAACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCAAAGTTGCACCCACGGACCTCCCGATCGATGTTGACCCGCCAACAATTGAAGAAAACCAGCATGGCCATCAGACAAATCAAGAGCGGCAAAGCAGCAGAACCAGACAACATTCCAGCAGAGGCACTGAAAGCAGATGTAGCAGTAACTGCAAAGATATTCCATATTCTTTTCAATAATATTTGGGATGAAGAACAAGTACGAACAGACTGAAAAGAAGGACACCTGATCAAAATATCAGAGAAAGGCGATCTCAAGCAAGTGTGATAACTACGATTTCCATGCCTAAAAATTTATGTTATTCGTTAAACTCACGGTTGGCCTGTGTAAACCTATGTGCTTTAGCGAGTTGTAGGGAG] [+] EMBL CD138808 [ACCGCCAACATTGAAGAACAACTAAAACAGGTGGGTAAAACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCAAAGTTGCACCCACGGACCTCCCGATCGATGTTGACCCGCCAACAATTGAAGAAAACCAGCATGGCCATCAGACAAATCAAGAGCGGCAAAGCAGCAGAACCAGACAACATTCCAGCAGAGGCACTGAAAGCAGATGTAGCAGTAACTGCAAAGATATTCCATATTCTTTTCAATAATATTTGGGATGAAGAACAAGTACGAACAGACTGAAAAGAAGGACACCTGATCAAAATATCAGAGAAAGGCGATCTCAAGCAAGTGTGATAACTACGATTTCCATGCCTAAAAATTTATGTTATTCGTTAAACTCACGGTTGGCCTGTGTAAACCTATGTGCTTTAGCGAGTTGTAGGGAG] consensusID : consensus_236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [AAGTCCAAGGGCACAAGCGCGAATACACAGACGTAAACAGACGACTGAAGAGGAGCATCAGAACCGACAAACGTAAATATGTGGAAGATTTAGCATTGACAGCGGAAAAGGCTGAAAGAGGGGGAAACATGAGACAACTGTATGATACAACAAAGAAACTCTCTGGCAATTACCCGTATTTAACCAGAACGACCAGTGAAAAGCAAGGGAGGGTGGGGCAATCACCAACATTGAAGAACAACTAAACAGGTGTGTAGTACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCGAAGTAGCACCCACAGAACTCCCAATCGATGTTGA] [+] EMBL CD088279 [AAGTCCAAGGGCACAAGCGCGAATACACAGACGTAAACAGACGACTGAAGAGGAGCATCAGAACCGACAAACGTAAATATGTGGAAGATTTAGCATTGACAGCGGAAAAGGCTGAAAGAGGGGGAAACATGAGACAACTGTATGATACAACAAAGAAACTCTCTGGCAATTACCCGTATTTAACCAGAACGACCAGTGAAAAGCAAGGGAGGGTGGGGCAATCACCAACATTGAAGAACAACTAAACAGGTGTGTAGTACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCGAAGTAGCACCCACAGAACTCCCAATCGATGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_236#0 ACCGCCAACATTGAAGAACAACTAAAACAGGTGGGTAAAACACTTCAAAGAACTCTTGAA 60 consensus_236#1 ------------------------------------------------------------ consensus_236#0 TCGACCAGCTCCACTGAACCCACCCAACATCAAAGTTGCACCCACGGACCTCCCGATCGA 120 consensus_236#1 -------------------------AAGTCCAAGGGCACAAGCGCGAATAC----ACAGA 31 ** *** * ** * ** * * ** consensus_236#0 TGTTGACCCGCCAACAATTGAAGAAAACCAGCATGGCCATCAGAC--AAAT-CAAGAGCG 177 consensus_236#1 CGTAAACA----GACGACTGAAGAGGAGCATCAGAACCGACAAACGTAAATATGTGGAAG 87 ** ** ** * ****** * ** ** ** ** ** **** * * consensus_236#0 GCAAAGCAGCAGAACCAGACAACATTCCAGCAGAGGCACTGAAAGCAGATGTAGCAGTAA 237 consensus_236#1 ATTTAGCATTGACAGCGGAAAAGGCTGAAAGAGGGGGAAACATGAGACAACTGTATGATA 147 **** * * ** ** * * ** ** * * * * * * * consensus_236#0 CTGCAAAGATATTCCATATTCTTTTCAATAATATTTGGGATGAAGAACAAGTACGAACAG 297 consensus_236#1 CAACAAAGAAACTCTCTGGCAATTAC--CCGTATTTAACCAGAACGACCAGT--GAAAAG 203 * ****** * ** * ** * ***** *** ** *** *** ** consensus_236#0 ACTGAAAAGAAGGACACCTGATCAAAATATCAGAGAAAGGCGATCTCAAGCAAGTGTGAT 357 consensus_236#1 CAAGGGAGGGTGGGGCAATCACCAA--CATTGAAGAACAAC-----TAAACAGGTGTG-- 254 * * * ** * * *** ** **** * ** ** ***** consensus_236#0 AACTACGATTTCCATGCCTAA-AAATTTATGTTATTCGTTAAACTCACGGTTGGCCTGTG 416 consensus_236#1 TAGTACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCGAAG 314 * *** ** * ** *** * * * * *** *** * * consensus_236#0 TAA-ACCTAT-GTGCTTTAGCGAGTTGTAGGGAG 448 consensus_236#1 TAGCACCCACAGAACTCCCAATCGATGTTGA--- 345 ** *** * * ** * *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||