These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [GCTTATCAAACGTGAACACAAGTCAAATATTTTGCAACAAGACATTCGGACTCCCAACATTTAGTAATATTTACGAAATCCAGTCAAAGTAGCCAAGAGGTGTACAACTTCACACATTTTATTTTGAGGAAGCTTTGACTACTATCAATTAAAAACATATGCTATACATGAGCAAACAATTTACTTTATCCCTTGCTTTACCAGAATCTAGGCATAATAATACATCTTGTCAATTCAATTATTTTTATTTAATTCACACTTTTGCTTCCAAAAACGGATTTTTATTTGCTTCATTTTATTATTAATAACAGCATAATGCTCTTTTCATTCAACGTCCTAGTGACTATTGGAAGGATACATACATCGGGGAATAGTATAAGACCAACTGACAAAAGCATTACAAATTAAAAGTAAACTTGTGTAAAATTTATTCATCATATTAATACTCATCATTTTGCACTTATTAGACACAGAAAACAAGGATTTTGTGTAAGACCAACATTACTAAGAACAACAGCACTAGATATCGTCGGTAGACTGGCGGTTGTAGCAGTAGATCTATTCGCCAGGT] [+] EMBL CD065259 [GCTTATCAAACGTGAACACAAGTCAAATATTTTGCAACAAGACATTCGGACTCCCAACATTTAGTAATATTTACGAAATCCAGTCAAAGTAGCCAAGAGGTGTACAACTTCACACATTTTATTTTGAGGAAGCTTTGACTACTATCAATTAAAAACATATGCTATACATGAGCAAACAATTTACTTTATCCCTTGCTTTACCAGAATCTAGGCATAATAATACATCTTGTCAATTCAATTATTTTTATTTAATTCACACTTTTGCTTCCAAAAACGGATTTTTATTTGCTTCATTTTATTATTAATAACAGCATAATGCTCTTTTCATTCAACGTCCTAGTGACTATTGGAAGGATACATACATCGGGGAATAGTATAAGACCAACTGACAAAAGCATTACAAATTAAAAGTAAACTTGTGTAAAATTTATTCATCATATTAATACTCATCATTTTGCACTTATTAGACACAGAAAACAAGGATTTTGTGTAAGACCAACATTACTAAGAACAACAGCACTAGATATCGTCGGTAGACTGGCGGTTGTAGCAGTAGATCTATTCGCCAGGT] consensusID : consensus_2370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [CAGGTGATAATACGACAGCATCTTTTCAGTCATTTATTACTAAAGGTGATAATAATGCTACAGTTGGACTGAATGATTTGCCACTCTTAACTAATGCATTATCAAATCTTGAAAGCACATGCATCACTGTTGACCAGACGGCTGTTTCACATTCGACCTACCTGGCGAATAGATCTACTGCTACAACCGCCAGTCTACCGACGATATTTAGTGCTGTTGTTCTTAGTAATGTTGGTCTTACACAAAATCCTTGTTTATCTGTTTCGGCAGACACTAATCCGGTTCCGGGAATAGCTTTTTCAACTAGGAATCAGCCTCCTTACATACCAGCCCCACTTGTTCTTGGAAACGGCCTAACACTAACCACATTGTTGACTGCTGAGAACATCAGTGGTCTTCTAACACCTACAACTCCAAACACTGCTTTCTTACCACTTCTGGCATCCCCTGGTCCCGGAGGTTTTTATACACCTG] [+] EMBL CD086767 [CAGGTGATAATACGACAGCATCTTTTCAGTCATTTATTACTAAAGGTGATAATAATGCTACAGTTGGACTGAATGATTTGCCACTCTTAACTAATGCATTATCAAATCTTGAAAGCACATGCATCACTGTTGACCAGACGGCTGTTTCACATTCGACCTACCTGGCGAATAGATCTACTGCTACAACCGCCAGTCTACCGACGATATTTAGTGCTGTTGTTCTTAGTAATGTTGGTCTTACACAAAATCCTTGTTTATCTGTTTCGGCAGACACTAATCCGGTTCCGGGAATAGCTTTTTCAACTAGGAATCAGCCTCCTTACATACCAGCCCCACTTGTTCTTGGAAACGGCCTAACACTAACCACATTGTTGACTGCTGAGAACATCAGTGGTCTTCTAACACCTACAACTCCAAACACTGCTTTCTTACCACTTCTGGCATCCCCTGGTCCCGGAGGTTTTTATACACCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2370#0 GCTTATCAAACGTGAACACAAGTCAAATATTTTGCAACAAGACATTCGGACTCCCAACAT 60 consensus_2370#1 ---------------------------CAGGTGATAATACGACAGCATCTTTTCAGTCAT 33 * * ** * **** * * *** consensus_2370#0 TTAGTAATATTTACGA-AATCCAGTCAAAGTAGCCAAGAGGTGTACAACTTCACACATTT 119 consensus_2370#1 TTATTACTAAAGGTGATAATAATGCTACAGTTG-----GACTGAATGATTTGCCACTCTT 88 *** ** ** ** *** * * *** * ** * * ** *** ** consensus_2370#0 TATTTTGAGGAAGCTTTGACTACTATCAATTAAAAACATATGCTATACATGAGCAAACAA 179 consensus_2370#1 AACT-----AATGCATTATCAAATCTTGA--AAGCACATGCATCACTGTTGACCAGACGG 141 * * * ** ** * * * * * ** **** * *** ** ** consensus_2370#0 TTTACTTTATCCCTTGCTTTACCAGAATCTAGGCATAATAATACATCTTGTCAATTCAAT 239 consensus_2370#1 CT-GTTTCACATTCGACCTACCTGGCGAATAGATCTACTGCTACAACC-GCCAGT-CTAC 198 * ** * * * * * *** ** * **** * * ** * * * consensus_2370#0 TATTTTTATTTAATTCACACTTTTGCTTCCAAAAACGG-ATTTTTATTTGCTTCATTTTA 298 consensus_2370#1 CGACGATATTTAGT----GCTGTTGTTCTTAGTAATGTTGGTCTTACACAAAATCCTTGT 254 ****** * ** *** * * ** * * *** ** consensus_2370#0 TTATTAATAACAGCATAATGCTCTTTTCATTCAACGTCCTAGTGACTATTGGAAGGATAC 358 consensus_2370#1 TTATCTGTTTCGGCA-GACACTAATCCGGTTCCGGG----AATAGCTTTTTCAACTAGGA 309 **** * * *** * ** * *** * * * ** ** ** * consensus_2370#0 ATACATCGGGGAATAGTATAAGACCAACTGACAAAAGCATTACAAATTAAAAGTAAACTT 418 consensus_2370#1 ATCAGCCTCCTTACA-TACCAGCCCCACTTGTTCTTGGAA-ACGGCCTAACACTAACCAC 367 ** * * * ** ** ** *** * * ** *** * *** * consensus_2370#0 GTGTAAAATTTATTCATCATATTAATACTCATCATTTTGCACTTATTAGACACAGAAAAC 478 consensus_2370#1 ATT----GTTGACTGCTGAGAACATCAGTGGTCTTCTAACACCTAC--AACTCCAAACAC 421 * ** * * * * * * * * ** * * *** ** ** * ** ** consensus_2370#0 AAGGATTTTGTGTAAGACCAACATTACTAAGAACAACAGCACTAGATATCGTCGGTAGAC 538 consensus_2370#1 TGCTTTCTTAC-CACTTCTGGCATCCCCTGGTCCCGGAGGTTTTTATACACCTG------ 474 * ** * * *** * * * ** * *** * consensus_2370#0 TGGCGGTTGTAGCAGTAGATCTATTCGCCAGGT 571 consensus_2370#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||