cluster # 2407

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Schistosoma mansoni
cluster # 2407 cluster # 2407 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2407#0 length = 500 sequences # 1

consensus_2407#1 length = 331 sequences # 1

consensusID : consensus_2407#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence

                              [TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCGTTAATAGTAACTTATTTATTAGTATTATTGAGTACGCCCAATCGAGTCCAAGCAGCTCTTATATTATACATTGAATTCATTTAAAATACACCCAAATCACATATTGTTATGAAACTGTCATAGTGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGAATAAATCTATGAGAAACATGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAAAATAAAAATGACTCATTCGAAGATGACAGATGGGACGCATACAGATTGATATATCTGCATCTTGAACTGAACGCTAGTTCCGAAATACAGGTACATCCGGCTGTCAAGTTCCAAATAGGACGAAACTCGAGTCCTTGATTCAACTGCTAAACACTATCCATCTCTTGTTATAATGCTTGAACTTAATGGCAACATCGAGG]

[+] EMBL CD086465             [TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCGTTAATAGTAACTTATTTATTAGTATTATTGAGTACGCCCAATCGAGTCCAAGCAGCTCTTATATTATACATTGAATTCATTTAAAATACACCCAAATCACATATTGTTATGAAACTGTCATAGTGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGAATAAATCTATGAGAAACATGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAAAATAAAAATGACTCATTCGAAGATGACAGATGGGACGCATACAGATTGATATATCTGCATCTTGAACTGAACGCTAGTTCCGAAATACAGGTACATCCGGCTGTCAAGTTCCAAATAGGACGAAACTCGAGTCCTTGATTCAACTGCTAAACACTATCCATCTCTTGTTATAATGCTTGAACTTAATGGCAACATCGAGG]




>consensus_2407#0
TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCG
TTAATAGTAACTTATTTATTAGTATTATTGAGTACGCCCAATCGAGTCCAAGCAGCTCTT
ATATTATACATTGAATTCATTTAAAATACACCCAAATCACATATTGTTATGAAACTGTCA
TAGTGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGAATAAATCTA
TGAGAAACATGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAA
AATAAAAATGACTCATTCGAAGATGACAGATGGGACGCATACAGATTGATATATCTGCAT
CTTGAACTGAACGCTAGTTCCGAAATACAGGTACATCCGGCTGTCAAGTTCCAAATAGGA
CGAAACTCGAGTCCTTGATTCAACTGCTAAACACTATCCATCTCTTGTTATAATGCTTGA
ACTTAATGGCAACATCGAGG

consensusID : consensus_2407#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCGATAATAGTAACTTATCTATTAATATTATCGAATACGCGCGGATAACTACAAGCAACTTTTATTTTATACATTGACTACCTCTTGAAGACACCCAGATCACATATTGCTATGAAACTGTCATAGGGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGATTAAATCTATGAGAAACACGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAAAATAAAAATGACTCATTCTAAGATGACAGAT]

[+] EMBL CD086469             [TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCGATAATAGTAACTTATCTATTAATATTATCGAATACGCGCGGATAACTACAAGCAACTTTTATTTTATACATTGACTACCTCTTGAAGACACCCAGATCACATATTGCTATGAAACTGTCATAGGGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGATTAAATCTATGAGAAACACGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAAAATAAAAATGACTCATTCTAAGATGACAGAT]




>consensus_2407#1
TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCG
ATAATAGTAACTTATCTATTAATATTATCGAATACGCGCGGATAACTACAAGCAACTTTT
ATTTTATACATTGACTACCTCTTGAAGACACCCAGATCACATATTGCTATGAAACTGTCA
TAGGGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGATTAAATCTA
TGAGAAACACGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAA
AATAAAAATGACTCATTCTAAGATGACAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2407#0      TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCG 60
consensus_2407#1      TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCG 60
                      ************************************************************

consensus_2407#0      TTAATAGTAACTTATTTATTAGTATTATTGAGTACGCCCAATCGAGTCCAAGCAGCTCTT 120
consensus_2407#1      ATAATAGTAACTTATCTATTAATATTATCGAATACGCGCGGATAACTACAAGCAACTTTT 120
                       ************** ***** ****** ** ***** *     * * ****** ** **

consensus_2407#0      ATATTATACATTGAATTCATTTAAAATACACCCAAATCACATATTGTTATGAAACTGTCA 180
consensus_2407#1      ATTTTATACATTGACTACCTCTTGAAGACACCCAGATCACATATTGCTATGAAACTGTCA 180
                      ** *********** * * * *  ** ******* *********** *************

consensus_2407#0      TAGTGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGAATAAATCTA 240
consensus_2407#1      TAGGGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGATTAAATCTA 240
                      *** *********************************************** ********

consensus_2407#0      TGAGAAACATGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAA 300
consensus_2407#1      TGAGAAACACGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAA 300
                      ********* **************************************************

consensus_2407#0      AATAAAAATGACTCATTCGAAGATGACAGATGGGACGCATACAGATTGATATATCTGCAT 360
consensus_2407#1      AATAAAAATGACTCATTCTAAGATGACAGAT----------------------------- 331
                      ****************** ************                             

consensus_2407#0      CTTGAACTGAACGCTAGTTCCGAAATACAGGTACATCCGGCTGTCAAGTTCCAAATAGGA 420
consensus_2407#1      ------------------------------------------------------------
                                                                                  

consensus_2407#0      CGAAACTCGAGTCCTTGATTCAACTGCTAAACACTATCCATCTCTTGTTATAATGCTTGA 480
consensus_2407#1      ------------------------------------------------------------
                                                                                  

consensus_2407#0      ACTTAATGGCAACATCGAGG 500
consensus_2407#1      --------------------