These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [AAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGCTGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAGACTGGTTATGTCAATACAGGATCGAACTCGACTGTTGTTTGTACAGATATCTGTAAAGTCAATAATGGTGATTGTGATGTCAATGCTATCTGTTCACGTGATTCAACAACAAACCAAGCTATTTGTACTTGTAAACCTGGTTATGCTGATACTGGTTCAAAATCACGAGTCATTTGTACACCTATCTGTGAAGTTAAGAATGGTGGCTGTCATGCCAATGCTACCTGCTCCTATAGTGCGACAAGCAATATTGTCACATGTACTTGCAAAACTGGTTTCACCAACACAGGAACTGCAACCAATGTTACTTGCACAGACAGTTGCTTGGTGAAAAATGGAGGTTGTGATGCTAATGCTATCTGTTCACACGATAAGACGACATTCCAGGTTCAATGTACTTGCCA] [+] EMBL CD087624 [AAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGCTGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAGACTGGTTATGTCAATACAGGATCGAACTCGACTGTTGTTTGTACAGATATCTGTAAAGTCAATAATGGTGATTGTGATGTCAATGCTATCTGTTCACGTGATTCAACAACAAACCAAGCTATTTGTACTTGTAAACCTGGTTATGCTGATACTGGTTCAAAATCACGAGTCATTTGTACACCTATCTGTGAAGTTAAGAATGGTGGCTGTCATGCCAATGCTACCTGCTCCTATAGTGCGACAAGCAATATTGTCACATGTACTTGCAAAACTGGTTTCACCAACACAGGAACTGCAACCAATGTTACTTGCACAGACAGTTGCTTGGTGAAAAATGGAGGTTGTGATGCTAATGCTATCTGTTCACACGATAAGACGACATTCCAGGTTCAATGTACTTGCCA] consensusID : consensus_2419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [TCAACAATGGTGGATGTGATAAAAATGCTGCATGCACACATGATCCCAAAACGGATGCAGTTGTTTGCATTTGTAATCAGGATTATACCAATTCTGGTCCAGAATCGGTTGTTGTGGGTACTGATATTTCGAAAGTCAACAATGGTGGTTGTACAAAAACCGTTATTTGCACAGGTAGTTCAACAAACAATGCACTTAATTGTACATGCAAACCTGAATACACAAATGTGGGATGTACATCCAATGTTGTTGCCAAGAATAGTTGTCTGGTCAATAATGGTGGATGCGAAAAGAATGCTATCTGTTCGCATGATCCAAAATCGGACGAAGTCAAATGTACTTGCAAGAGAGGCTTCACCAATACGGGAACTGAAAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGCTGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAG] [-] EMBL CD086619 [TCAACAATGGTGGATGTGATAAAAATGCTGCATGCACACATGATCCCAAAACGGATGCAGTTGTTTGCATTTGTAATCAGGATTATACCAATTCTGGTCCAGAATCGGTTGTTGTGGGTACTGATATTTCGAAAGTCAACAATGGTGGTTGTACAAAAACCGTTATTTGCACAGGTAGTTCAACAAACAATGCACTTAATTGTACATGCAAACCTGAATACACAAATGTGGGATGTACATCCAATGTTGTTGCCAAGAATAGTTGTCTGGTCAATAATGGTGGATGCGAAAAGAATGCTATCTGTTCGCATGATCCAAAATCGGACGAAGTCAAATGTACTTGCAAGAGAGGCTTCACCAATACGGGAACTGAAAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGCTGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2419#0 AAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGC 60 consensus_2419#1 --------------------------------TCAACAATGGTGGATGTGATAAAAATGC 28 ************* ******** ***** consensus_2419#0 TGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAGACTGGTTATGT 120 consensus_2419#1 TGCATGCACACATGATCCCAAAACGGATGCAGTTGTTTGCATTTGTAATCAGGATTATAC 88 *** ** * ** *** * * ** *** ** **** ** ** * **** consensus_2419#0 CAATACAGGATCGAACTCGACTGTTGTTTGTACAGATATCTGTAAAGTCAATAATGGTGA 180 consensus_2419#1 CAATTCTGGTCCAGAATCGGTTGTTGTGGGTACTGATATTTCGAAAGTCAACAATGGTGG 148 **** * ** * * *** ****** **** ***** * ******** ******* consensus_2419#0 TTGTGATGTCAATGCTATCTGTTCACGTGATTCAACAACAAACCAAGCTATTTGTACTTG 240 consensus_2419#1 TTGTACAAAAACCGTTATTTGCACAGGTAGTTCAACAAACAATGCACTTAATTGTACATG 208 **** * * *** ** ** ** ******** ** * ** ****** ** consensus_2419#0 TAAACCTGGTTATGCTGATACTGGTTCAAAATCACGAGTCATTTGTACACCTATCTGTGA 300 consensus_2419#1 CAAACCTGAATACACAAATGTGGGATGTACATCCAATGTTGTTGCCAAGAATAGTTGTCT 268 ******* ** * ** ** * * *** ** ** * ** *** consensus_2419#0 AGTTAAGAATGGTGGCTGTCATGCCAATGCTACCTGCTCCTATAGTGCGACAAGCAATAT 360 consensus_2419#1 GGTCAATAATGGTGGATGCGAAAAGAATGCTATCTGTTCGCATGATCCAAAATCGGACGA 328 ** ** ******** ** * ******* *** ** ** * * * * * consensus_2419#0 TGTCACATGTACTTGCAAAACTGGTTTCACCAACACAGGAACTGCAACCAATGTTACTTG 420 consensus_2419#1 AGTCAAATGTACTTGCAAGAGAGGCTTCACCAATACGGGAACTGAAAGTGTAACTAACTG 388 **** ************ * ** ******** ** ******* ** ** ** consensus_2419#0 CACAGACAGTTGCTTGGTGAAAAATGGAGGTTGTGATGCTAATGCTATCTGTTCACACGA 480 consensus_2419#1 CACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGCTGCTTGTTCGCACGA 448 ************ *** * ** ***** ********* ****** ***** ***** consensus_2419#0 TAAGACGACATTCCAGGTTCAATGTACTTGCCA- 513 consensus_2419#1 TGCTACTACCAATGATGTACAATGCACATGCAAG 482 * ** ** * ** ***** ** *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||