cluster # 2419

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2419 cluster # 2419 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2419#0 length = 513 sequences # 1

consensus_2419#1 length = 482 sequences # 1

consensusID : consensus_2419#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [AAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGCTGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAGACTGGTTATGTCAATACAGGATCGAACTCGACTGTTGTTTGTACAGATATCTGTAAAGTCAATAATGGTGATTGTGATGTCAATGCTATCTGTTCACGTGATTCAACAACAAACCAAGCTATTTGTACTTGTAAACCTGGTTATGCTGATACTGGTTCAAAATCACGAGTCATTTGTACACCTATCTGTGAAGTTAAGAATGGTGGCTGTCATGCCAATGCTACCTGCTCCTATAGTGCGACAAGCAATATTGTCACATGTACTTGCAAAACTGGTTTCACCAACACAGGAACTGCAACCAATGTTACTTGCACAGACAGTTGCTTGGTGAAAAATGGAGGTTGTGATGCTAATGCTATCTGTTCACACGATAAGACGACATTCCAGGTTCAATGTACTTGCCA]

[+] EMBL CD087624             [AAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGCTGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAGACTGGTTATGTCAATACAGGATCGAACTCGACTGTTGTTTGTACAGATATCTGTAAAGTCAATAATGGTGATTGTGATGTCAATGCTATCTGTTCACGTGATTCAACAACAAACCAAGCTATTTGTACTTGTAAACCTGGTTATGCTGATACTGGTTCAAAATCACGAGTCATTTGTACACCTATCTGTGAAGTTAAGAATGGTGGCTGTCATGCCAATGCTACCTGCTCCTATAGTGCGACAAGCAATATTGTCACATGTACTTGCAAAACTGGTTTCACCAACACAGGAACTGCAACCAATGTTACTTGCACAGACAGTTGCTTGGTGAAAAATGGAGGTTGTGATGCTAATGCTATCTGTTCACACGATAAGACGACATTCCAGGTTCAATGTACTTGCCA]




>consensus_2419#0
AAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGC
TGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAGACTGGTTATGT
CAATACAGGATCGAACTCGACTGTTGTTTGTACAGATATCTGTAAAGTCAATAATGGTGA
TTGTGATGTCAATGCTATCTGTTCACGTGATTCAACAACAAACCAAGCTATTTGTACTTG
TAAACCTGGTTATGCTGATACTGGTTCAAAATCACGAGTCATTTGTACACCTATCTGTGA
AGTTAAGAATGGTGGCTGTCATGCCAATGCTACCTGCTCCTATAGTGCGACAAGCAATAT
TGTCACATGTACTTGCAAAACTGGTTTCACCAACACAGGAACTGCAACCAATGTTACTTG
CACAGACAGTTGCTTGGTGAAAAATGGAGGTTGTGATGCTAATGCTATCTGTTCACACGA
TAAGACGACATTCCAGGTTCAATGTACTTGCCA

consensusID : consensus_2419#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [TCAACAATGGTGGATGTGATAAAAATGCTGCATGCACACATGATCCCAAAACGGATGCAGTTGTTTGCATTTGTAATCAGGATTATACCAATTCTGGTCCAGAATCGGTTGTTGTGGGTACTGATATTTCGAAAGTCAACAATGGTGGTTGTACAAAAACCGTTATTTGCACAGGTAGTTCAACAAACAATGCACTTAATTGTACATGCAAACCTGAATACACAAATGTGGGATGTACATCCAATGTTGTTGCCAAGAATAGTTGTCTGGTCAATAATGGTGGATGCGAAAAGAATGCTATCTGTTCGCATGATCCAAAATCGGACGAAGTCAAATGTACTTGCAAGAGAGGCTTCACCAATACGGGAACTGAAAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGCTGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAG]

[-] EMBL CD086619             [TCAACAATGGTGGATGTGATAAAAATGCTGCATGCACACATGATCCCAAAACGGATGCAGTTGTTTGCATTTGTAATCAGGATTATACCAATTCTGGTCCAGAATCGGTTGTTGTGGGTACTGATATTTCGAAAGTCAACAATGGTGGTTGTACAAAAACCGTTATTTGCACAGGTAGTTCAACAAACAATGCACTTAATTGTACATGCAAACCTGAATACACAAATGTGGGATGTACATCCAATGTTGTTGCCAAGAATAGTTGTCTGGTCAATAATGGTGGATGCGAAAAGAATGCTATCTGTTCGCATGATCCAAAATCGGACGAAGTCAAATGTACTTGCAAGAGAGGCTTCACCAATACGGGAACTGAAAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGCTGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAG]




>consensus_2419#1
TCAACAATGGTGGATGTGATAAAAATGCTGCATGCACACATGATCCCAAAACGGATGCAG
TTGTTTGCATTTGTAATCAGGATTATACCAATTCTGGTCCAGAATCGGTTGTTGTGGGTA
CTGATATTTCGAAAGTCAACAATGGTGGTTGTACAAAAACCGTTATTTGCACAGGTAGTT
CAACAAACAATGCACTTAATTGTACATGCAAACCTGAATACACAAATGTGGGATGTACAT
CCAATGTTGTTGCCAAGAATAGTTGTCTGGTCAATAATGGTGGATGCGAAAAGAATGCTA
TCTGTTCGCATGATCCAAAATCGGACGAAGTCAAATGTACTTGCAAGAGAGGCTTCACCA
ATACGGGAACTGAAAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTT
GTGATAAGAATGCTGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCA
AG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2419#0      AAGTGTAACTAACTGCACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGC 60
consensus_2419#1      --------------------------------TCAACAATGGTGGATGTGATAAAAATGC 28
                                                      ************* ******** *****

consensus_2419#0      TGCTTGTTCGCACGATGCTACTACCAATGATGTACAATGCACATGCAAGACTGGTTATGT 120
consensus_2419#1      TGCATGCACACATGATCCCAAAACGGATGCAGTTGTTTGCATTTGTAATCAGGATTATAC 88
                      *** **  * ** *** * *  **  ***  **    ****  ** **    * ****  

consensus_2419#0      CAATACAGGATCGAACTCGACTGTTGTTTGTACAGATATCTGTAAAGTCAATAATGGTGA 180
consensus_2419#1      CAATTCTGGTCCAGAATCGGTTGTTGTGGGTACTGATATTTCGAAAGTCAACAATGGTGG 148
                      **** * **  *  * ***  ******  **** ***** *  ******** ******* 

consensus_2419#0      TTGTGATGTCAATGCTATCTGTTCACGTGATTCAACAACAAACCAAGCTATTTGTACTTG 240
consensus_2419#1      TTGTACAAAAACCGTTATTTGCACAGGTAGTTCAACAAACAATGCACTTAATTGTACATG 208
                      ****      *  * *** **  ** **  ********  **   *  ** ****** **

consensus_2419#0      TAAACCTGGTTATGCTGATACTGGTTCAAAATCACGAGTCATTTGTACACCTATCTGTGA 300
consensus_2419#1      CAAACCTGAATACACAAATGTGGGATGTACATCCAATGTTGTTGCCAAGAATAGTTGTCT 268
                       *******  **  *  **   ** *  * ***    **  **   *    **  ***  

consensus_2419#0      AGTTAAGAATGGTGGCTGTCATGCCAATGCTACCTGCTCCTATAGTGCGACAAGCAATAT 360
consensus_2419#1      GGTCAATAATGGTGGATGCGAAAAGAATGCTATCTGTTCGCATGATCCAAAATCGGACGA 328
                       ** ** ******** **  *    ******* *** **  **  * * * *    *   

consensus_2419#0      TGTCACATGTACTTGCAAAACTGGTTTCACCAACACAGGAACTGCAACCAATGTTACTTG 420
consensus_2419#1      AGTCAAATGTACTTGCAAGAGAGGCTTCACCAATACGGGAACTGAAAGTGTAACTAACTG 388
                       **** ************ *  ** ******** ** ******* **       **  **

consensus_2419#0      CACAGACAGTTGCTTGGTGAAAAATGGAGGTTGTGATGCTAATGCTATCTGTTCACACGA 480
consensus_2419#1      CACAGACAGTTGTTTGATCAACAATGGTGGTTGTGATAAGAATGCTGCTTGTTCGCACGA 448
                      ************ *** * ** ***** *********   ******   ***** *****

consensus_2419#0      TAAGACGACATTCCAGGTTCAATGTACTTGCCA- 513
consensus_2419#1      TGCTACTACCAATGATGTACAATGCACATGCAAG 482
                      *   ** **     * ** ***** ** *** *