These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [CGGGAGAAGCTCAGGCTTGAAATCCTGGACTCGTCAGGGTCTGGGAGTTGTAGCCTAATGGGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGGTGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGAGTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGACCAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTGTTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATGGGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTGCACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTTTCGGGGCGATG] [+] EMBL CD086764 [CGGGAGAAGCTCAGGCTTGAAATCCTGGACTCGTCAGGGTCTGGGAGTTGTAGCCTAATGGGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGGTGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGAGTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGACCAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTGTTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATGGGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTGCACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTTTCGGGGCGATG] consensusID : consensus_2421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [GCCGTGTTTATAAGTAGCCTAATGGGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGGTGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGAGTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGACCAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTGTTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATGGGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTGCACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTTTCGGGGCGATG] [+] EMBL CD086778 [GCCGTGTTTATAAGTAGCCTAATGGGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGGTGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGAGTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGACCAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTGTTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATGGGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTGCACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTTTCGGGGCGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2421#0 CGGGAGAAGCTCAGGCTTGAAATCCTGGACTCGTCAGGGTCTGGGAGTTGTAGCCTAATG 60 consensus_2421#1 ---------------------------------GCCGTGTTTATAA---GTAGCCTAATG 24 * * ** * * *********** consensus_2421#0 GGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGG 120 consensus_2421#1 GGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGG 84 ************************************************************ consensus_2421#0 TGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGA 180 consensus_2421#1 TGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGA 144 ************************************************************ consensus_2421#0 GTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGAC 240 consensus_2421#1 GTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGAC 204 ************************************************************ consensus_2421#0 CAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTG 300 consensus_2421#1 CAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTG 264 ************************************************************ consensus_2421#0 TTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATG 360 consensus_2421#1 TTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATG 324 ************************************************************ consensus_2421#0 GGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTG 420 consensus_2421#1 GGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTG 384 ************************************************************ consensus_2421#0 CACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTT 480 consensus_2421#1 CACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTT 444 ************************************************************ consensus_2421#0 TCGGGGCGATG 491 consensus_2421#1 TCGGGGCGATG 455 *********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||