cluster # 2432

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2432 cluster # 2432 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2432#0 length = 349 sequences # 1

consensus_2432#1 length = 339 sequences # 1

consensusID : consensus_2432#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [GTCGAAATGATAGACAATCATCTTCTGATATGAAAGGAGGAAATGAATTGACTGTTATGGATGGTAAATCAATTGAAAGTTATTCACATCATTCACAATATCAGCACACTGAATCTTCAACATCGCTTAGTAAACCATTAAACGAAATCCAGTCCAGTTCTGGAATTATGATGGGATTAACTTCTACTGCATTCAATCAATCTACATGTCAACAACGATTACCAAGTATTGCTCAAGCAATGTATGGTATATCTCAAACAATTACACCATCATTTGGATTATTAACACCTAATCCACCACCAAAAGGTCCAATATATAAATGGACTCCTGATGATGTTGTTGCATTTGT]

[+] EMBL CD087056             [GTCGAAATGATAGACAATCATCTTCTGATATGAAAGGAGGAAATGAATTGACTGTTATGGATGGTAAATCAATTGAAAGTTATTCACATCATTCACAATATCAGCACACTGAATCTTCAACATCGCTTAGTAAACCATTAAACGAAATCCAGTCCAGTTCTGGAATTATGATGGGATTAACTTCTACTGCATTCAATCAATCTACATGTCAACAACGATTACCAAGTATTGCTCAAGCAATGTATGGTATATCTCAAACAATTACACCATCATTTGGATTATTAACACCTAATCCACCACCAAAAGGTCCAATATATAAATGGACTCCTGATGATGTTGTTGCATTTGT]




>consensus_2432#0
GTCGAAATGATAGACAATCATCTTCTGATATGAAAGGAGGAAATGAATTGACTGTTATGG
ATGGTAAATCAATTGAAAGTTATTCACATCATTCACAATATCAGCACACTGAATCTTCAA
CATCGCTTAGTAAACCATTAAACGAAATCCAGTCCAGTTCTGGAATTATGATGGGATTAA
CTTCTACTGCATTCAATCAATCTACATGTCAACAACGATTACCAAGTATTGCTCAAGCAA
TGTATGGTATATCTCAAACAATTACACCATCATTTGGATTATTAACACCTAATCCACCAC
CAAAAGGTCCAATATATAAATGGACTCCTGATGATGTTGTTGCATTTGT

consensusID : consensus_2432#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [GGTTACAATTTAAATTAAGGGTATAAAGTTTAAATAAGTCAGCATAAAATATATATATATAGAAATAAATCTGTGTTTGTGTGTAGATTCCGGATTATTATTATTATTATTCTATTAAATAATGTTATCATTAACAACAATTCTTTAAAGATTCTAATCGTGCAACTAATTTCAAAGCTGGTCCTATTTTCATACCAATTGGTGGTTGAATAAATTGATCTTCAGCTAATAATAATAATGCTTCACCATCTATTTCATTATTTAAAAATGCTGATGCATATGCTCCACAACCAGGTGTACCACGAACAAATGCAACAACATCATCAGGAGTCCATTTAT]

[+] EMBL CD114880             [GGTTACAATTTAAATTAAGGGTATAAAGTTTAAATAAGTCAGCATAAAATATATATATATAGAAATAAATCTGTGTTTGTGTGTAGATTCCGGATTATTATTATTATTATTCTATTAAATAATGTTATCATTAACAACAATTCTTTAAAGATTCTAATCGTGCAACTAATTTCAAAGCTGGTCCTATTTTCATACCAATTGGTGGTTGAATAAATTGATCTTCAGCTAATAATAATAATGCTTCACCATCTATTTCATTATTTAAAAATGCTGATGCATATGCTCCACAACCAGGTGTACCACGAACAAATGCAACAACATCATCAGGAGTCCATTTAT]




>consensus_2432#1
GGTTACAATTTAAATTAAGGGTATAAAGTTTAAATAAGTCAGCATAAAATATATATATAT
AGAAATAAATCTGTGTTTGTGTGTAGATTCCGGATTATTATTATTATTATTCTATTAAAT
AATGTTATCATTAACAACAATTCTTTAAAGATTCTAATCGTGCAACTAATTTCAAAGCTG
GTCCTATTTTCATACCAATTGGTGGTTGAATAAATTGATCTTCAGCTAATAATAATAATG
CTTCACCATCTATTTCATTATTTAAAAATGCTGATGCATATGCTCCACAACCAGGTGTAC
CACGAACAAATGCAACAACATCATCAGGAGTCCATTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2432#0      GTCGAAATGATAGACAATCATCTTCTGATATGAAAGGAGGAAATGAATTGACTGT-TATG 59
consensus_2432#1      --GGTTACAATTTAAATTAAGGGTATAAAGTTTAAATAAGTCA-GCATAAAATATATATA 57
                         *  *  **  * * * *   * * *  *  **  * *  * * **  * * * *** 

consensus_2432#0      GATGGTAAATCAATTGAAAGTTATTCACATCATTCACAATATCAGCACACTGAATCTTCA 119
consensus_2432#1      TATAG-AAATAAATCTGTGTTTGTGTGTAGATTCCGGATTATTATTATTATTATTCTATT 116
                       ** * **** ***      ** *    *   * *  * *** *  *   * * ***   

consensus_2432#0      ACATCGCTTAGTAAACCATTAAACGAAATCCAGTCCAGTTCTGGAATTATGATGGGATTA 179
consensus_2432#1      AAATAATGTTAT----CATTAACAACAATTCTTTAAAGATTC----TAATCGTGCAACTA 168
                      * **    *  *    ******    *** *  *  ** *      * **  **  * **

consensus_2432#0      ACTTCTACTGCATTCAATCAATCTACATGTCAAC-AACGATT--ACCAAGTATTGCTCAA 236
consensus_2432#1      ATTTCAA---AGCTGGTCCTATTTTCATACCAATTGGTGGTTGAATAAATTGATCTTCAG 225
                      * *** *      *    * ** * ***  ***     * **  *  ** *  *  *** 

consensus_2432#0      GCAATGTATGGTATATCTCAAACAATTACACCATCATTTGGAT-TATTAACACCTAA--T 293
consensus_2432#1      CTAATA-ATAATAATGCTTCACCATCTATTTCATTATTTAAAAATGCTGATGCATATGCT 284
                        ***  **  **   **  * **  **   *** ****  *  *  * *  * **   *

consensus_2432#0      CCACCACCAAAAGGTCCAATATATAAATGGACTCCTGATGATGTTGTTGCATTTGT 349
consensus_2432#1      CCACAACCAGGTGTACCA-CGAACAAATGCAACAACATCATCAGGAGTCCATTTAT 339
                      **** ****   *  ***    * ***** *                * ***** *