These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [CAGCTTATAGATGAAATGAACAGGAACAAAAAAGCTTGTAAAAGGAACAGTATTTCACATCACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGCGTAATAAAAATGTTCAAATGTGTTTTAAAAATCAACATACATGAACACAAAATCAGAATAGTGACTCGACCATGTAAATTGATAGCTATATCTATGTTATATCGTACAGTGCGTGAGTGCCCTGTTTGATATATGAACGTGCTGATTCCCGCCAATGATA] [+] EMBL CD087308 [CAGCTTATAGATGAAATGAACAGGAACAAAAAAGCTTGTAAAAGGAACAGTATTTCACATCACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGCGTAATAAAAATGTTCAAATGTGTTTTAAAAATCAACATACATGAACACAAAATCAGAATAGTGACTCGACCATGTAAATTGATAGCTATATCTATGTTATATCGTACAGTGCGTGAGTGCCCTGTTTGATATATGAACGTGCTGATTCCCGCCAATGATA] consensusID : consensus_2446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 144 fasta sequence [TGAACAGGATTAAAGGAGCTTGTATTAGGAACAGTATTTCACATCACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGTGTAATAAAAATGTTCAAATGTCTTTGGACAATTAGCATTCATGA] [+] EMBL CD087348 [TGAACAGGATTAAAGGAGCTTGTATTAGGAACAGTATTTCACATCACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGTGTAATAAAAATGTTCAAATGTCTTTGGACAATTAGCATTCATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2446#0 CAGCTTATAGATGAAATGAACAGGAACAAAAAAGCTTGTAAAAGGAACAGTATTTCACAT 60 consensus_2446#1 ----------------TGAACAGGATTAAAGGAGCTTGTATTAGGAACAGTATTTCACAT 44 ********* *** ******** ****************** consensus_2446#0 CACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGCGTAA 120 consensus_2446#1 CACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGTGTAA 104 ******************************************************* **** consensus_2446#0 TAAAAATGTTCAAATGTGTTTTAAAAATCAACATACATGAACACAAAATCAGAATAGTGA 180 consensus_2446#1 TAAAAATGTTCAAATGTCTTTGGACAATTAGCATTCATGA-------------------- 144 ***************** *** * *** * *** ***** consensus_2446#0 CTCGACCATGTAAATTGATAGCTATATCTATGTTATATCGTACAGTGCGTGAGTGCCCTG 240 consensus_2446#1 ------------------------------------------------------------ consensus_2446#0 TTTGATATATGAACGTGCTGATTCCCGCCAATGATA 276 consensus_2446#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||