These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [TTATCACGCTACATTAACCTGTCTCCAACCATTCAATACGATCAGCATCTACGAAACACTCAATAAATCAGAGTAAGAGACTGATTACTGAGAATTCAACCGGTGTTAATTGAAGGATATCCATAAAATGAGAAGTGGGGAGCAGAAAAAACTATTATGTGTTTACTGCCAGACAGTAAGCTTTGTATGAATGGACGGATACAATACTTACCATGAAAATGAACTTGTTCGATACACTTCCATAGCAATGCATGATATTAAACCGCTTTTAGATGAAAGAATACAATGACAGTTGCAGACGGGTAAATAAGACATTAATCTATAATTCGGTGATAAGGGTATTATCAAGAAAATAACGGTAAGAACTTAAGTCGGAGTGGTCTTCCTAGGTTCAATAACTACGGAAGACAAGATCTCCAAATAT] [+] EMBL CD087803 [TTATCACGCTACATTAACCTGTCTCCAACCATTCAATACGATCAGCATCTACGAAACACTCAATAAATCAGAGTAAGAGACTGATTACTGAGAATTCAACCGGTGTTAATTGAAGGATATCCATAAAATGAGAAGTGGGGAGCAGAAAAAACTATTATGTGTTTACTGCCAGACAGTAAGCTTTGTATGAATGGACGGATACAATACTTACCATGAAAATGAACTTGTTCGATACACTTCCATAGCAATGCATGATATTAAACCGCTTTTAGATGAAAGAATACAATGACAGTTGCAGACGGGTAAATAAGACATTAATCTATAATTCGGTGATAAGGGTATTATCAAGAAAATAACGGTAAGAACTTAAGTCGGAGTGGTCTTCCTAGGTTCAATAACTACGGAAGACAAGATCTCCAAATAT] consensusID : consensus_2461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [TCACTACAGAAAATATAGTAGAGGGATTTCGCTTCCTTAACCTAGTTATAGATGATACTAAAATAGAAACTGGTACAAATATACGTCAATTTGACTTTTCAATGTTATAAACGTAACAAAAGAATAAGTGAAGGACCAAAAACAATGGCAACTGAAGTAGTCGAAAACTAAAAGGAATATACGGCAAAATTAATTTGATGCTAGGAGTAGTATTAAGTTCTAGACTCACGAGAAAATGAAACACCAGTCTACTTACACAGCTGAAGTTGTTATCACGCTACATTAACCTGTCTCCAACCA] [+] EMBL CD181202 [TCACTACAGAAAATATAGTAGAGGGATTTCGCTTCCTTAACCTAGTTATAGATGATACTAAAATAGAAACTGGTACAAATATACGTCAATTTGACTTTTCAATGTTATAAACGTAACAAAAGAATAAGTGAAGGACCAAAAACAATGGCAACTGAAGTAGTCGAAAACTAAAAGGAATATACGGCAAAATTAATTTGATGCTAGGAGTAGTATTAAGTTCTAGACTCACGAGAAAATGAAACACCAGTCTACTTACACAGCTGAAGTTGTTATCACGCTACATTAACCTGTCTCCAACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2461#0 TTATCACGCTACATTAACCTGTCTCCAACCATTCAATACGATCAGCATCTACGAAACACT 60 consensus_2461#1 -------------------------------------------------------TCACT 5 **** consensus_2461#0 CAATAAATCAGAGTAAGAGACTGATTACTGAGAATTCAACCGGTGTTAATTGAAGGATAT 120 consensus_2461#1 ACAGAAAATATAGTAGAGG---GATTTC-GCTTCCTTAACC-----TAGTTATAGATGAT 56 * *** * **** * **** * * * **** ** ** ** ** consensus_2461#0 CCATAAAATGAGAAGTGGGGAGCAGAAAAAACTATTATGTGTTT-ACTGCCAGACA-GTA 178 consensus_2461#1 AC-TAAAATAGAAACTGGTACAAATATACGTCAATTTGACTTTTCAATGTTATAAACGTA 115 * ****** ** *** * * * * *** *** * ** * * * *** consensus_2461#0 AGCTTTGTATGAATGGACGGATACAATACTTACCATGAAAATGAACTTGTTCGATACACT 238 consensus_2461#1 ACAAAAGAATAAGTGAAGGACCAAAA-----ACAATGGCAACTGAAGTAGTCGAAA-ACT 169 * * ** * ** * * * ** ** *** ** * * **** * *** consensus_2461#0 TCCATAGCAATGCA-TGATATTAAACCGCTTTTAGATGAAAGAATACAATGACAGTTGCA 297 consensus_2461#1 AAAAGGAATATACGGCAAAATTAATTTGATGCTAGGAGTAGTATTA-AGTTCTAGACTCA 228 * ** * * ***** * * *** * * * ** * * ** ** consensus_2461#0 GACGGGTAAATAAGACATTAATCTATAATTCGGTGATAAGGGTATTATCAAGAAAATAAC 357 consensus_2461#1 --CGAGAAAATGAAACACCAGTCTACT-TACACAGCTGAAGTTGTTATCACG-------C 278 ** * **** * *** * **** * * * * * * * ****** * * consensus_2461#0 GGTAAGAACTTAAGTCGGAGTGGTCTTCCTAGGTTCAATAACTACGGAAGACAAGATCTC 417 consensus_2461#1 TACATTAACCTGTCTCCAACCA-------------------------------------- 300 * *** * ** * consensus_2461#0 CAAATAT 424 consensus_2461#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||