These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [TGTACTTGCTTTAGCTGATGAGATAGACTCACTCTTACGAGGAGTGGCTAACTGCTTAAGTCTGTCTGCATCTGAGTAGCGAATGATCTGTGTTAGTTTGTTAGTAGACACAGCACCAGCTTGAATAGCTGCCCACTCATCATCGTCAATGCTAATCCTTACCTTCTTACCAGAAGCTCCAACTTGTACACGAGCTGCTGCAATAGATTGTTGCTTAAGCTTCTTAAGTTGGTCTGGGCTGCATGTCAGGAGTCGTTTAGATGCCATANNGTCTGTAGCAAATCAGTGAGCTTGGCGTTCTTAGGAGCATTCATTAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGNCTGCACTTAAATCTAGCTTNCTTACTGANGNGCATG] [+] EMBL CD087948 [TGTACTTGCTTTAGCTGATGAGATAGACTCACTCTTACGAGGAGTGGCTAACTGCTTAAGTCTGTCTGCATCTGAGTAGCGAATGATCTGTGTTAGTTTGTTAGTAGACACAGCACCAGCTTGAATAGCTGCCCACTCATCATCGTCAATGCTAATCCTTACCTTCTTACCAGAAGCTCCAACTTGTACACGAGCTGCTGCAATAGATTGTTGCTTAAGCTTCTTAAGTTGGTCTGGGCTGCATGTCAGGAGTCGTTTAGATGCCATANNGTCTGTAGCAAATCAGTGAGCTTGGCGTTCTTAGGAGCATTCATTAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGNCTGCACTTAAATCTAGCTTNCTTACTGANGNGCATG] consensusID : consensus_2463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [AGCTCCAACTTGTACACGAGCTGCTGCAATAGATTGTGCTTAAGCNTTCTTAAGTTGGTCTGGCTGCATGTCAGGAGTTCGTTTAGATGCAATGGTTCTGTTAGCAATCAGTTGAGCTTGGCGTTCTTTAGGAGCATTCATAAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGTCTGTACTTAATCTTAGCTTCCTTACTCATGTG] [-] EMBL CD087879 [AGCTCCAACTTGTACACGAGCTGCTGCAATAGATTGTGCTTAAGCNTTCTTAAGTTGGTCTGGCTGCATGTCAGGAGTTCGTTTAGATGCAATGGTTCTGTTAGCAATCAGTTGAGCTTGGCGTTCTTTAGGAGCATTCATAAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGTCTGTACTTAATCTTAGCTTCCTTACTCATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2463#0 TGTACTTGCTTTAGCTGATGAGATAGACTCACTCTTACGAGGAGTGGCTAACTGCTTAAG 60 consensus_2463#1 ------------------------------------------------------------ consensus_2463#0 TCTGTCTGCATCTGAGTAGCGAATGATCTGTGTTAGTTTGTTAGTAGACACAGCACCAGC 120 consensus_2463#1 ------------------------------------------------------------ consensus_2463#0 TTGAATAGCTGCCCACTCATCATCGTCAATGCTAATCCTTACCTTCTTACCAGAAGCTCC 180 consensus_2463#1 ------------------------------------------------------AGCTCC 6 ****** consensus_2463#0 AACTTGTACACGAGCTGCTGCAATAGATTGTTGCTTAAGCTT-CTTAAGTTGGTCTGGGC 239 consensus_2463#1 AACTTGTACACGAGCTGCTGCAATAGATTGT-GCTTAAGCNTTCTTAAGTTGGTCTGG-C 64 ******************************* ******** * *************** * consensus_2463#0 TGCATGTCAGGAGT-CGTTTAGATGCCATANNGTCTGTAGCAAATCAGTGAGCTTGGCGT 298 consensus_2463#1 TGCATGTCAGGAGTTCGTTTAGATGCAATGGTTCTGTTAGCAATCAGTTGAGCTTGGCGT 124 ************** *********** ** ****** ************ consensus_2463#0 TCTT-AGGAGCATTCATTAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGN 357 consensus_2463#1 TCTTTAGGAGCATTCATAAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGT 184 **** ************ ***************************************** consensus_2463#0 CTGCACTTAAATCTAGCTTNCTTACTGANGNGCATG 393 consensus_2463#1 CTGTACTTAATCTTAGCTTCCTTACTCATGTG---- 216 *** ****** ****** ****** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||