These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GTCAGTATAGTCCCTATCTTCTGGTGGGACATATAGGCGAAGAAGAACATCTGGTTAGTACGAAAGGACCATCAGGTGCGCACCTCTGGTGTATCTGCTATAGTTCATTGACTGTACTGCAGAGTAGCTACGTGCGTTAAGGATAAGACCTGAAAGCATATAAGGTCGAAGCTGCTCTTTGGAGACTAAACAGCAACGGGATGTAGACCACGTCCTTGATAGGTCACATGTGTAAGCTCCGTTAAGGAGTGAGCTGAGTGATACTAATGTGTTGCA] [+] EMBL CD088217 [GTCAGTATAGTCCCTATCTTCTGGTGGGACATATAGGCGAAGAAGAACATCTGGTTAGTACGAAAGGACCATCAGGTGCGCACCTCTGGTGTATCTGCTATAGTTCATTGACTGTACTGCAGAGTAGCTACGTGCGTTAAGGATAAGACCTGAAAGCATATAAGGTCGAAGCTGCTCTTTGGAGACTAAACAGCAACGGGATGTAGACCACGTCCTTGATAGGTCACATGTGTAAGCTCCGTTAAGGAGTGAGCTGAGTGATACTAATGTGTTGCA] consensusID : consensus_2473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [TAGCCGGAGACTAAGTGGCTATGAAGAGCCAATAACAGCATAATGGCAAAAGTGTGCTAAACTGTAAGACTGACAGGTCAATCAGGTACGTAAGTAGGGCATAGTGAACCGATAGTATGTTATGGTACAGCTATCGTTCATCGGATAAGTTACGCTAGGGATAACAGGCTGATAGCGCGAAAGAGTTCATATCGTAAGCGCTGTTTGGCACCTCGATGTCGACTCATCACATCCTCCCGGTGTATCAGCTGGGAAGGTTTCAACTGTTCGTTGA] [+] EMBL CD088242 [TAGCCGGAGACTAAGTGGCTATGAAGAGCCAATAACAGCATAATGGCAAAAGTGTGCTAAACTGTAAGACTGACAGGTCAATCAGGTACGTAAGTAGGGCATAGTGAACCGATAGTATGTTATGGTACAGCTATCGTTCATCGGATAAGTTACGCTAGGGATAACAGGCTGATAGCGCGAAAGAGTTCATATCGTAAGCGCTGTTTGGCACCTCGATGTCGACTCATCACATCCTCCCGGTGTATCAGCTGGGAAGGTTTCAACTGTTCGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2473#0 -GTCAGTATAGTCCCTATCTTCTGGTGGGACATATAGGCGAAGAAGAACATCTGGTTAGT 59 consensus_2473#1 TAGCCGGAGACTAAGTGGCTATGAAGAGCCAATAACAGCATAATGGCAAAAGTGTGCTAA 60 * * * * * * ** * *** ** * * * * ** consensus_2473#0 ACGAAAGGACCATCAGGTGCGCACCTCTGGTGTATCTGCTATAGTTCATTGACTGTAC-- 117 consensus_2473#1 ACTGTAAGACTGACAGGTCAATCAGGTACGTAAGTAGGGCATAGTGAACCGATAGTATGT 120 ** * *** ***** ** * * ***** * ** *** consensus_2473#0 TGCAGAGTAGCTA-CGTGCGTTAAGGATAAGACCTGA-AAGCATATAAGGTCGAAGCTGC 175 consensus_2473#1 TATGGTACAGCTATCGTTCATC--GGATAAGTTACGCTAGGGATAACAGGCTGA--TAGC 176 * * ***** *** * * ******* * * * *** *** ** ** consensus_2473#0 TCTTTGGAGACTAAACAGCAACGGGATGTAGACCACGTCCTTGATAGGTCACATGTGTAA 235 consensus_2473#1 GCGAAAGAGTTCATATCGTAA-GCGCTGTTTGGCACCTCGATGTCGACTCAT-CACATCC 234 * *** * * * ** * * *** *** ** ** *** * consensus_2473#0 GCTCCGTTAAGGAGTGAGCTGAGTGATACTAATGTGTTGCA 276 consensus_2473#1 TCCCGGTGTATCAGCTGGGAAGGTTTCAACTGTTCGTTGA- 274 * * ** * ** * ** * * **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||