cluster # 2538

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Schistosoma mansoni
cluster # 2538 cluster # 2538 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2538#0 length = 442 sequences # 1

consensus_2538#1 length = 347 sequences # 1

consensusID : consensus_2538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CATCAATTAACAAAATATTTTGAAACCTCTTTAGTAACATCGTCTCTAGTTGAGTAGAGTATATTATATACAACCTTAAGTGCTTCTGCTGAAACATTCAAATCGGTTATCTTCGAACTTTTCATCTTCACGATTTTCATAAGCATCTGCAGAGCGTTGGATTTGATTAATTCTTGTCTTGAAGCCGAATCCAGAGCGGTAACAAGAAAAAGAAGCTTAAGACATAGCAGGAGCCTCTCATTATTCTCAGTTTCAATGAGGATATCCACACTTTCCATCACACTTTTAATGAGACCCATGGTCCTAAACAGTTAAAATACAGAAGTACGACTGACTTAAGTGGTTCTATGACACATGACTCTTTAAACAAAATATTGGAAAGAGATTTTAGAGCTTCTAGACTAGTTTTAGAATACTCAAGGTTGCAATTATATTCAAAGGC]

[+] EMBL CD066194             [CATCAATTAACAAAATATTTTGAAACCTCTTTAGTAACATCGTCTCTAGTTGAGTAGAGTATATTATATACAACCTTAAGTGCTTCTGCTGAAACATTCAAATCGGTTATCTTCGAACTTTTCATCTTCACGATTTTCATAAGCATCTGCAGAGCGTTGGATTTGATTAATTCTTGTCTTGAAGCCGAATCCAGAGCGGTAACAAGAAAAAGAAGCTTAAGACATAGCAGGAGCCTCTCATTATTCTCAGTTTCAATGAGGATATCCACACTTTCCATCACACTTTTAATGAGACCCATGGTCCTAAACAGTTAAAATACAGAAGTACGACTGACTTAAGTGGTTCTATGACACATGACTCTTTAAACAAAATATTGGAAAGAGATTTTAGAGCTTCTAGACTAGTTTTAGAATACTCAAGGTTGCAATTATATTCAAAGGC]




>consensus_2538#0
CATCAATTAACAAAATATTTTGAAACCTCTTTAGTAACATCGTCTCTAGTTGAGTAGAGT
ATATTATATACAACCTTAAGTGCTTCTGCTGAAACATTCAAATCGGTTATCTTCGAACTT
TTCATCTTCACGATTTTCATAAGCATCTGCAGAGCGTTGGATTTGATTAATTCTTGTCTT
GAAGCCGAATCCAGAGCGGTAACAAGAAAAAGAAGCTTAAGACATAGCAGGAGCCTCTCA
TTATTCTCAGTTTCAATGAGGATATCCACACTTTCCATCACACTTTTAATGAGACCCATG
GTCCTAAACAGTTAAAATACAGAAGTACGACTGACTTAAGTGGTTCTATGACACATGACT
CTTTAAACAAAATATTGGAAAGAGATTTTAGAGCTTCTAGACTAGTTTTAGAATACTCAA
GGTTGCAATTATATTCAAAGGC

consensusID : consensus_2538#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [TCTTTACCAGCATCCAACTTAAGCTGTGAGTGAAGAAAGTCTATCAAAGTTTCAATTGAAGACATCCCATTTGTTTTGTTTTCTGGAGCCGAATCTTTGATTAAATTATCAGTGGCATGATCATTAAAATTTCCATCCAAAAGGTGTTTGTATAAATGTTTCGGAATGATGTTCAATACGTTAACCACCTGACCAAAGCATAACTATTGAATTCACTCAACATTGGATCTTGTAAAATGCATCTCAACATTACTACGAGATTTCGGATGTCGTCACCTAACTCTTTAGTAACATCGTCTCTAGTTGAGTAGAGTATATTATATACNACCTTAAGTGCTTCTGCTGAA]

[+] EMBL CD196096             [TCTTTACCAGCATCCAACTTAAGCTGTGAGTGAAGAAAGTCTATCAAAGTTTCAATTGAAGACATCCCATTTGTTTTGTTTTCTGGAGCCGAATCTTTGATTAAATTATCAGTGGCATGATCATTAAAATTTCCATCCAAAAGGTGTTTGTATAAATGTTTCGGAATGATGTTCAATACGTTAACCACCTGACCAAAGCATAACTATTGAATTCACTCAACATTGGATCTTGTAAAATGCATCTCAACATTACTACGAGATTTCGGATGTCGTCACCTAACTCTTTAGTAACATCGTCTCTAGTTGAGTAGAGTATATTATATACNACCTTAAGTGCTTCTGCTGAA]




>consensus_2538#1
TCTTTACCAGCATCCAACTTAAGCTGTGAGTGAAGAAAGTCTATCAAAGTTTCAATTGAA
GACATCCCATTTGTTTTGTTTTCTGGAGCCGAATCTTTGATTAAATTATCAGTGGCATGA
TCATTAAAATTTCCATCCAAAAGGTGTTTGTATAAATGTTTCGGAATGATGTTCAATACG
TTAACCACCTGACCAAAGCATAACTATTGAATTCACTCAACATTGGATCTTGTAAAATGC
ATCTCAACATTACTACGAGATTTCGGATGTCGTCACCTAACTCTTTAGTAACATCGTCTC
TAGTTGAGTAGAGTATATTATATACNACCTTAAGTGCTTCTGCTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2538#0      CATCAATTAACAAAATATTTTGAAACCTCTTTAGTAACATCGTCTCTAGTTGAGTAGAGT 60
consensus_2538#1      ---TCTTTACCAGCATCCAACTTAAGCTGTGAGTGAAGAAAGTCT---ATCAA--AGTTT 52
                            *** **  **       ** ** *     ** *  ****    *  *  **  *

consensus_2538#0      ATATTATATACAACCTTAAGTGCTTCTGCTGAAACATTCAAATCGGTTATCTTCGAACTT 120
consensus_2538#1      CAATTGAAGACATCCC-ATTTGTTTTGTTTTCTGGAGCCGAATCTTTGATT----AAATT 107
                        ***  * *** **  *  ** **    *     *  * ****  * **     ** **

consensus_2538#0      TTCATCTTCACGATTTTCATAAGCATCTGCAGAGCGTTGGATTTGATTAATTCTTGTCTT 180
consensus_2538#1      ATCAGTGGCATGATCATTAAAATTTCCATCCAAAAGGTG--TTTGTATAAAT---GTTTC 162
                       ***    ** ***  * * **    *  *  *  * **  ****  *** *   ** * 

consensus_2538#0      GAAGCCGAATCCAGAGCGGTAACAAGAAAAAGAAGCTTAAGACATAGCAGGAGCCTCTCA 240
consensus_2538#1      GGAATGATGTTCAATACGTTAACCACCTGACCAAAGCATAACTATTG---AATTCACTCA 219
                      * *      * **   ** **** *    *  **     *   ** *    *  * ****

consensus_2538#0      TTATTCTCAGTTTCAATGAGGATATCCACACTTTCCATCACACTTTTAATGAGACCCATG 300
consensus_2538#1      ACATTGGATCTTGTAAAATGCATCTCAACA-TTACTACGAGATTTCGGATGTCGTCA--- 275
                        ***     **  **   * ** ** *** ** * *  * * **   ***    *    

consensus_2538#0      GTCCTAAACAGTTAAAATACAGAAGTACGACTGACTTAAGTGGTTCTATGACACATGACT 360
consensus_2538#1      --CCTAACTCTTTAG----TAACATCGTCTCTAGTTGAGTAGAGTATATTATATACNAC- 328
                        *****    ***      *  *      **   * *   *  * *** * * *  ** 

consensus_2538#0      CTTTAAACAAAATATTGGAAAGAGATTTTAGAGCTTCTAGACTAGTTTTAGAATACTCAA 420
consensus_2538#1      CTTAAGTGCTTCTGCTGAA----------------------------------------- 347
                      *** *       *  ** *                                         

consensus_2538#0      GGTTGCAATTATATTCAAAGGC 442
consensus_2538#1      ----------------------