cluster # 2540

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Schistosoma mansoni
cluster # 2540 cluster # 2540 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2540#0 length = 507 sequences # 1

consensus_2540#1 length = 333 sequences # 1

consensusID : consensus_2540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [AGAGTTTGATCCTGGCTCAGAATCAACGCTGGCGGCGTGCCTCAGACATGCAAGTCGTACGTGAAAGTCCTTCGGGATGAGTAAAGTGGCGCACGGGTGAGTAACACGTGAGTAATTTGCCTTTGGGTGGGGAATACCAACCGGAAACGGTTGTTAATACCGCATAACGCTTACGCTGTAATGGCGTAGGTTAAAGCGGGGGATCGCAAGACCTCGCGCCTGAAGAGAAGCTCGCGGCAGATTAGGTAGTTGGTGAGGTAATGGCTCACCAAGCCTGCGATCTGTAGCCGGCCTGAGAGGGCGGTCGGCCACACTGACACTGACATACGGGTCAGACTCCTACGGGAGGCAGCAGTCGGGAATTTTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGATGAAGCATTTCGGTGTGTAAACTTCGCAAGAATAGGAAGAATAAGTTTGAACGAATAGTTCATACGATGACGGTACTATTTATAAGCTCCGGCTAACT]

[+] EMBL CD158897             [AGAGTTTGATCCTGGCTCAGAATCAACGCTGGCGGCGTGCCTCAGACATGCAAGTCGTACGTGAAAGTCCTTCGGGATGAGTAAAGTGGCGCACGGGTGAGTAACACGTGAGTAATTTGCCTTTGGGTGGGGAATACCAACCGGAAACGGTTGTTAATACCGCATAACGCTTACGCTGTAATGGCGTAGGTTAAAGCGGGGGATCGCAAGACCTCGCGCCTGAAGAGAAGCTCGCGGCAGATTAGGTAGTTGGTGAGGTAATGGCTCACCAAGCCTGCGATCTGTAGCCGGCCTGAGAGGGCGGTCGGCCACACTGACACTGACATACGGGTCAGACTCCTACGGGAGGCAGCAGTCGGGAATTTTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGATGAAGCATTTCGGTGTGTAAACTTCGCAAGAATAGGAAGAATAAGTTTGAACGAATAGTTCATACGATGACGGTACTATTTATAAGCTCCGGCTAACT]




>consensus_2540#0
AGAGTTTGATCCTGGCTCAGAATCAACGCTGGCGGCGTGCCTCAGACATGCAAGTCGTAC
GTGAAAGTCCTTCGGGATGAGTAAAGTGGCGCACGGGTGAGTAACACGTGAGTAATTTGC
CTTTGGGTGGGGAATACCAACCGGAAACGGTTGTTAATACCGCATAACGCTTACGCTGTA
ATGGCGTAGGTTAAAGCGGGGGATCGCAAGACCTCGCGCCTGAAGAGAAGCTCGCGGCAG
ATTAGGTAGTTGGTGAGGTAATGGCTCACCAAGCCTGCGATCTGTAGCCGGCCTGAGAGG
GCGGTCGGCCACACTGACACTGACATACGGGTCAGACTCCTACGGGAGGCAGCAGTCGGG
AATTTTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGATGAAGCATTTC
GGTGTGTAAACTTCGCAAGAATAGGAAGAATAAGTTTGAACGAATAGTTCATACGATGAC
GGTACTATTTATAAGCTCCGGCTAACT

consensusID : consensus_2540#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [AGTTTGATCCTGGCTCAGATTGAGCGCTGGCGGCATGCCTTACACATGCAAGTCGAACGGTAACGCGGGGCAACCTGGCGATGAGTGGCGAACGGGTGAGTAATATATAGAACGTGTCCATGAGTGGGGGATAGCCCGGCGATAGCCGGATTAATACGGCATAAGACGCGAGGGTGAAAGCGGGGGATATTAGGACCTCGCGTTGATGGAGCGGCCGATACCAGATTAGGTAGTTGGTGAGGTAAAGGCTCACCAAGCCTGCGCTCTGTAGTTGGTTTGAGAGGAGTGGCTCAGCCGACGGTGGGAATTGAGAGCTCGGTCCAGACTCCTACG]

[-] EMBL CD089351             [AGTTTGATCCTGGCTCAGATTGAGCGCTGGCGGCATGCCTTACACATGCAAGTCGAACGGTAACGCGGGGCAACCTGGCGATGAGTGGCGAACGGGTGAGTAATATATAGAACGTGTCCATGAGTGGGGGATAGCCCGGCGATAGCCGGATTAATACGGCATAAGACGCGAGGGTGAAAGCGGGGGATATTAGGACCTCGCGTTGATGGAGCGGCCGATACCAGATTAGGTAGTTGGTGAGGTAAAGGCTCACCAAGCCTGCGCTCTGTAGTTGGTTTGAGAGGAGTGGCTCAGCCGACGGTGGGAATTGAGAGCTCGGTCCAGACTCCTACG]




>consensus_2540#1
AGTTTGATCCTGGCTCAGATTGAGCGCTGGCGGCATGCCTTACACATGCAAGTCGAACGG
TAACGCGGGGCAACCTGGCGATGAGTGGCGAACGGGTGAGTAATATATAGAACGTGTCCA
TGAGTGGGGGATAGCCCGGCGATAGCCGGATTAATACGGCATAAGACGCGAGGGTGAAAG
CGGGGGATATTAGGACCTCGCGTTGATGGAGCGGCCGATACCAGATTAGGTAGTTGGTGA
GGTAAAGGCTCACCAAGCCTGCGCTCTGTAGTTGGTTTGAGAGGAGTGGCTCAGCCGACG
GTGGGAATTGAGAGCTCGGTCCAGACTCCTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2540#0      AGAGTTTGATCCTGGCTCAGAATCAACGCTGGCGGCGTGCCTCAGACATGCAAGTCGTAC 60
consensus_2540#1      --AGTTTGATCCTGGCTCAGATTGAGCGCTGGCGGCATGCCTTACACATGCAAGTCGAAC 58
                        ******************* * * ********** ***** * ************ **

consensus_2540#0      GTGAAAGTCCTTCGGGATGAGTA-AAGTGGCGCACGGGTGAGTAACACGTGAGTAATTTG 119
consensus_2540#1      GGTAACGCGGGGCAACCTGGCGATGAGTGGCGAACGGGTGAGTAATATATAG--AACGTG 116
                      *  ** *     *    **   *  ******* ************ *  *    **  **

consensus_2540#0      CCTTTGGGTGGGGAATACCAACCGGAAACGGTTG--TTAATACCGCATAACGCTTACGCT 177
consensus_2540#1      TCCATGAGTGGGGGATAGC--CCGGCGATAGCCGGATTAATACGGCATAAGAC------- 167
                       *  ** ****** *** *  ****  *  *  *  ******* ******  *       

consensus_2540#0      GTAATGGCGTAGGTTAAAGCGGGGGATCGCAAGACCTCGCGCCTGAAGAGAAGCTCGCGG 237
consensus_2540#1      ------GCGAGGGTGAAAGCGGGGGATATTAGGACCTCGCGTTGATGGAGCGGCCGATAC 221
                            ***  *** ************   * *********      ***  **      

consensus_2540#0      CAGATTAGGTAGTTGGTGAGGTAATGGCTCACCAAGCCTGCGATCTGTAGCCGGCCTGAG 297
consensus_2540#1      CAGATTAGGTAGTTGGTGAGGTAAAGGCTCACCAAGCCTGCGCTCTGTAGTTGGTTTGAG 281
                      ************************ ***************** *******  **  ****

consensus_2540#0      AGG-GCGG-TCGGCC-ACACTGACA-CTGACA-TACGGGTCAGACTCCTACGGGAGGCAG 352
consensus_2540#1      AGGAGTGGCTCAGCCGACGGTGGGAATTGAGAGCTCGGTCCAGACTCCTACG-------- 333
                      *** * ** ** *** **  **  *  *** *   ***  ************        

consensus_2540#0      CAGTCGGGAATTTTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGATGA 412
consensus_2540#1      ------------------------------------------------------------
                                                                                  

consensus_2540#0      AGCATTTCGGTGTGTAAACTTCGCAAGAATAGGAAGAATAAGTTTGAACGAATAGTTCAT 472
consensus_2540#1      ------------------------------------------------------------
                                                                                  

consensus_2540#0      ACGATGACGGTACTATTTATAAGCTCCGGCTAACT 507
consensus_2540#1      -----------------------------------