These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [GAGCACCCTAATTAATTATGTCGGAGAACTCCTGTAGCTTATCATCCCCATTTGTCATTCCCCCNTTCTCCAATTCTTTCTTTCCTTGCCCGGGGGGAACGCCGCCGGGTCCGTTTGGCTTGACCGGTCAAGCCAACCCATGGGCCGCCGTTCGCCAAAGCTCTTTTGGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCTCCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCTATGTGCCCGGTCAAGTACG] [+] EMBL CD089508 [GAGCACCCTAATTAATTATGTCGGAGAACTCCTGTAGCTTATCATCCCCATTTGTCATTCCCCCNTTCTCCAATTCTTTCTTTCCTTGCCCGGGGGGAACGCCGCCGGGTCCGTTTGGCTTGACCGGTCAAGCCAACCCATGGGCCGCCGTTCGCCAAAGCTCTTTTGGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCTCCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCTATGTGCCCGGTCAAGTACG] consensusID : consensus_2547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [GCGTTTTTCCATGGGGGAGCACCCTAATTAATTATGTCGGAGAACTCCTGTTGCTTATCATCCCCATTTGTCATTCCCCCTTCTCCATTCTTCTTCCTGCCGGGGGACGCCCGGTCGTTGCTGACGTCAGCAACCATGGCCGCGTCGCCAGAGCTCTTTGGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCTCCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCTATGTGCCCGGTCAAGTACG] [+] EMBL CD089544 [GCGTTTTTCCATGGGGGAGCACCCTAATTAATTATGTCGGAGAACTCCTGTTGCTTATCATCCCCATTTGTCATTCCCCCTTCTCCATTCTTCTTCCTGCCGGGGGACGCCCGGTCGTTGCTGACGTCAGCAACCATGGCCGCGTCGCCAGAGCTCTTTGGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCTCCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCTATGTGCCCGGTCAAGTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2547#0 ----------------GAGCACCCTAATTAATTATGTCGGAGAACTCCTGTAGCTTATCA 44 consensus_2547#1 GCGTTTTTCCATGGGGGAGCACCCTAATTAATTATGTCGGAGAACTCCTGTTGCTTATCA 60 *********************************** ******** consensus_2547#0 TCCCCATTTGTCATTCCCCCNTTCTCCAATTCTTTCTTTCCTTGCCCGGGGGGAACGCCG 104 consensus_2547#1 TCCCCATTTGTCATTCCCCCTT-CTCCA----TTCTTCTTCCTGCCGGGGGA------CG 109 ******************** * ***** ** * * * **** **** ** consensus_2547#0 CCGGGTCCGTTTGGCTTGACCGGTCAAGCCAACCCATGGGCCGCCGTTCGCCAAAGCTCT 164 consensus_2547#1 CCCGGTC--GTTG--CTGAC--GTCAG--CAACC-ATGG-CCGCG--TCGCCAGAGCTCT 157 ** **** *** **** **** ***** **** **** ****** ****** consensus_2547#0 TTTGGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCT 224 consensus_2547#1 TT-GGTAGTCCAGTGCCGCCTCCCTTTGCTCACCTAGTCCGGTAGCCTGCTGTGTTCCCT 216 ** ********************************************************* consensus_2547#0 CCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCT 284 consensus_2547#1 CCAGACTATGGTGAGCTGGCCTCTTCTCTGCACCTCCTCTCCCCCTGTTCTTTTTCTGCT 276 ************************************************************ consensus_2547#0 ATGTGCCCGGTCAAGTACG 303 consensus_2547#1 ATGTGCCCGGTCAAGTACG 295 ******************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||