cluster # 2567

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Schistosoma mansoni
cluster # 2567 cluster # 2567 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2567#0 length = 417 sequences # 1

consensus_2567#1 length = 343 sequences # 1

consensusID : consensus_2567#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [TTTAACAGCGAGATTTGAGGCTACTTCAGATTCTGCAATTTGCATTATATATTTATTAACTTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGAAATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTCACTTTCTTTGATGAAGCCGAGTAGTTTCATATATCTCTTTAAGTCTACTAACTGTCCAGTATTTCTAAGGAAGTTAAGAAAGTGAAACGCGGCTACTGAATTTTTTAACAAAATATTTTCAAAAGTGCTTTCTGATAATGAATTCCTAAGTTCATTAACAATCTTTGTAATTAAATTGCCGTCACAAGTGCTTGTAGTTCAATTTAAAATAACTGATTTGGAAGATTGTGAAACAAAAGTAC]

[+] EMBL CD197010             [TTTAACAGCGAGATTTGAGGCTACTTCAGATTCTGCAATTTGCATTATATATTTATTAACTTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGAAATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTCACTTTCTTTGATGAAGCCGAGTAGTTTCATATATCTCTTTAAGTCTACTAACTGTCCAGTATTTCTAAGGAAGTTAAGAAAGTGAAACGCGGCTACTGAATTTTTTAACAAAATATTTTCAAAAGTGCTTTCTGATAATGAATTCCTAAGTTCATTAACAATCTTTGTAATTAAATTGCCGTCACAAGTGCTTGTAGTTCAATTTAAAATAACTGATTTGGAAGATTGTGAAACAAAAGTAC]




>consensus_2567#0
TTTAACAGCGAGATTTGAGGCTACTTCAGATTCTGCAATTTGCATTATATATTTATTAAC
TTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGA
AATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTCACTTT
CTTTGATGAAGCCGAGTAGTTTCATATATCTCTTTAAGTCTACTAACTGTCCAGTATTTC
TAAGGAAGTTAAGAAAGTGAAACGCGGCTACTGAATTTTTTAACAAAATATTTTCAAAAG
TGCTTTCTGATAATGAATTCCTAAGTTCATTAACAATCTTTGTAATTAAATTGCCGTCAC
AAGTGCTTGTAGTTCAATTTAAAATAACTGATTTGGAAGATTGTGAAACAAAAGTAC

consensusID : consensus_2567#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [ACTGTAATATGAACTCCATTCTCGTTCCTAATATAAACAGATTACTAATTATCAAGTGAACAGAAATAAATACATAGCTGTTTTGATAATCCAGGATAACAGCCAACTCAGAAGAGATTTCAACAATATTTTTAACAGCGAGATTTGAGGCTACTTCAGATCTAAACGAAGTTAGTAGGAAGACTATATTTTACAATACTCTGCAATTTGCATTATATATTTATTAACTTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGAAATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTC]

[-] EMBL CD089967             [ACTGTAATATGAACTCCATTCTCGTTCCTAATATAAACAGATTACTAATTATCAAGTGAACAGAAATAAATACATAGCTGTTTTGATAATCCAGGATAACAGCCAACTCAGAAGAGATTTCAACAATATTTTTAACAGCGAGATTTGAGGCTACTTCAGATCTAAACGAAGTTAGTAGGAAGACTATATTTTACAATACTCTGCAATTTGCATTATATATTTATTAACTTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGAAATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTC]




>consensus_2567#1
ACTGTAATATGAACTCCATTCTCGTTCCTAATATAAACAGATTACTAATTATCAAGTGAA
CAGAAATAAATACATAGCTGTTTTGATAATCCAGGATAACAGCCAACTCAGAAGAGATTT
CAACAATATTTTTAACAGCGAGATTTGAGGCTACTTCAGATCTAAACGAAGTTAGTAGGA
AGACTATATTTTACAATACTCTGCAATTTGCATTATATATTTATTAACTTCATCTACGTG
ACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGAAATCTTTACAAC
AAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2567#0      TTTAACAGCGAGATTTGAGGCTACTTCAGATTCTGCAATTTGCATTATATATTTATTAAC 60
consensus_2567#1      ------ACTGTAATATGA----ACTCCATTCTC----GTTCCTAATATAAACAGATTACT 46
                            *  *  ** ***    *** **   **     **   * **** *   ****  

consensus_2567#0      TTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGA 120
consensus_2567#1      AATTATCAAGTGAACAGAA-ATAAATACAT-AGCTGTTTTGATAATCCAGGATAACAGCC 104
                             * **** * **  ****** *** * ** **     **   *  *** *    

consensus_2567#0      AATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTCACTTT 180
consensus_2567#1      AAC--TCAGAAGAGATTTCAACAATATTTTTAACAGCGAGATTTGAGGCTACTTCAGATC 162
                      **   * * ** *  * *     ** *   *         ** * **  *******  * 

consensus_2567#0      CTTTGATGAAGCCGAGTAGTTTCATATATCTCTTTA-AGTCTACTAACTGTCCAGTATTT 239
consensus_2567#1      --TAAACGAAGTTAGTAGGAAGACTATATTTTACAATACTCTGCAATTTGCATTATATAT 220
                        *  * ****       *     ***** *    * * *** * *  **     *** *

consensus_2567#0      CTAAGGAAGTTAAGAAAGTGAAACGCGGCTACTGAATTTTTTAACAAAATATTTTCAAAA 299
consensus_2567#1      TTATTAACTTCATCTACGTGACCCGAGGATA---AATTCATCAACT-----TTTGCATCA 272
                       **   *  * *   * ****  ** ** **   ****  * ***      *** **  *

consensus_2567#0      GTGCTTTCTGATAATGAATTCCTAAGTTCATTAACAATCTTTGTAATTAAATTGCCGTCA 359
consensus_2567#1      ACTGACTATAGCTAGAAATCTTTA----CAACAAGTAT-TTTGTATGTAAGTTGA-GATA 326
                            * *    *  ***   **    **  **  ** ******  *** ***  *  *

consensus_2567#0      CAAGTGCTTGTAGTTCAATTTAAAATAACTGATTTGGAAGATTGTGAAACAAAAGTAC 417
consensus_2567#1      CAA----TGTTAGCTTACTTC------------------------------------- 343
                      ***    *  *** * * **