These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [TTTAACAGCGAGATTTGAGGCTACTTCAGATTCTGCAATTTGCATTATATATTTATTAACTTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGAAATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTCACTTTCTTTGATGAAGCCGAGTAGTTTCATATATCTCTTTAAGTCTACTAACTGTCCAGTATTTCTAAGGAAGTTAAGAAAGTGAAACGCGGCTACTGAATTTTTTAACAAAATATTTTCAAAAGTGCTTTCTGATAATGAATTCCTAAGTTCATTAACAATCTTTGTAATTAAATTGCCGTCACAAGTGCTTGTAGTTCAATTTAAAATAACTGATTTGGAAGATTGTGAAACAAAAGTAC] [+] EMBL CD197010 [TTTAACAGCGAGATTTGAGGCTACTTCAGATTCTGCAATTTGCATTATATATTTATTAACTTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGAAATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTCACTTTCTTTGATGAAGCCGAGTAGTTTCATATATCTCTTTAAGTCTACTAACTGTCCAGTATTTCTAAGGAAGTTAAGAAAGTGAAACGCGGCTACTGAATTTTTTAACAAAATATTTTCAAAAGTGCTTTCTGATAATGAATTCCTAAGTTCATTAACAATCTTTGTAATTAAATTGCCGTCACAAGTGCTTGTAGTTCAATTTAAAATAACTGATTTGGAAGATTGTGAAACAAAAGTAC] consensusID : consensus_2567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [ACTGTAATATGAACTCCATTCTCGTTCCTAATATAAACAGATTACTAATTATCAAGTGAACAGAAATAAATACATAGCTGTTTTGATAATCCAGGATAACAGCCAACTCAGAAGAGATTTCAACAATATTTTTAACAGCGAGATTTGAGGCTACTTCAGATCTAAACGAAGTTAGTAGGAAGACTATATTTTACAATACTCTGCAATTTGCATTATATATTTATTAACTTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGAAATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTC] [-] EMBL CD089967 [ACTGTAATATGAACTCCATTCTCGTTCCTAATATAAACAGATTACTAATTATCAAGTGAACAGAAATAAATACATAGCTGTTTTGATAATCCAGGATAACAGCCAACTCAGAAGAGATTTCAACAATATTTTTAACAGCGAGATTTGAGGCTACTTCAGATCTAAACGAAGTTAGTAGGAAGACTATATTTTACAATACTCTGCAATTTGCATTATATATTTATTAACTTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGAAATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2567#0 TTTAACAGCGAGATTTGAGGCTACTTCAGATTCTGCAATTTGCATTATATATTTATTAAC 60 consensus_2567#1 ------ACTGTAATATGA----ACTCCATTCTC----GTTCCTAATATAAACAGATTACT 46 * * ** *** *** ** ** ** * **** * **** consensus_2567#0 TTCATCTACGTGACCCGAGGATAAATTCATCAACTTTTGCATCAACTGACTATAGCTAGA 120 consensus_2567#1 AATTATCAAGTGAACAGAA-ATAAATACAT-AGCTGTTTTGATAATCCAGGATAACAGCC 104 * **** * ** ****** *** * ** ** ** * *** * consensus_2567#0 AATCTTTACAACAAGTATTTTGTATGTAAGTTGAGATACAATGTTAGCTTACTTCACTTT 180 consensus_2567#1 AAC--TCAGAAGAGATTTCAACAATATTTTTAACAGCGAGATTTGAGGCTACTTCAGATC 162 ** * * ** * * * ** * * ** * ** ******* * consensus_2567#0 CTTTGATGAAGCCGAGTAGTTTCATATATCTCTTTA-AGTCTACTAACTGTCCAGTATTT 239 consensus_2567#1 --TAAACGAAGTTAGTAGGAAGACTATATTTTACAATACTCTGCAATTTGCATTATATAT 220 * * **** * ***** * * * *** * * ** *** * consensus_2567#0 CTAAGGAAGTTAAGAAAGTGAAACGCGGCTACTGAATTTTTTAACAAAATATTTTCAAAA 299 consensus_2567#1 TTATTAACTTCATCTACGTGACCCGAGGATA---AATTCATCAACT-----TTTGCATCA 272 ** * * * * **** ** ** ** **** * *** *** ** * consensus_2567#0 GTGCTTTCTGATAATGAATTCCTAAGTTCATTAACAATCTTTGTAATTAAATTGCCGTCA 359 consensus_2567#1 ACTGACTATAGCTAGAAATCTTTA----CAACAAGTAT-TTTGTATGTAAGTTGA-GATA 326 * * * *** ** ** ** ** ****** *** *** * * consensus_2567#0 CAAGTGCTTGTAGTTCAATTTAAAATAACTGATTTGGAAGATTGTGAAACAAAAGTAC 417 consensus_2567#1 CAA----TGTTAGCTTACTTC------------------------------------- 343 *** * *** * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||