These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [TTTTGAAAAAGGGTATCAGGAGTAACGTCTACGCATAACATCGGCTAATAAATCCCGACTGTTCGTCCGATCTTATTCGTAACTCAATGTTTCGAATCAGTGAACGTGTTCATTATTGATTGAAAACCTTTGAAGATACACTAATTTATTTTACCGTAAATGTTGAAAAATACATTGCTTCATCCTTGTTCTGTATACATTCATGTCTTCAATCCTGTCCAATTTTAATGTTCTACTTTCGTCGATTATCTACTGCTGATGCTTTTTTTATAGCTCCTTTCTTCTGTTCACTTAGTAGTGTTTAAAGTTAGTTATTACTGCATTTTAATTAAAAGGTAGTGTGTCAGTTGAAGTAACTAAAGCACTTCCACAGTTCATTAATATAAATTGTTGATAGTTTGTATTGTACCTAAATTTCTGTAGAAAAATGAAAATAAACTGTCCCATAATAACCTCTCAACATTGG] [+] EMBL CD066344 [TTTTGAAAAAGGGTATCAGGAGTAACGTCTACGCATAACATCGGCTAATAAATCCCGACTGTTCGTCCGATCTTATTCGTAACTCAATGTTTCGAATCAGTGAACGTGTTCATTATTGATTGAAAACCTTTGAAGATACACTAATTTATTTTACCGTAAATGTTGAAAAATACATTGCTTCATCCTTGTTCTGTATACATTCATGTCTTCAATCCTGTCCAATTTTAATGTTCTACTTTCGTCGATTATCTACTGCTGATGCTTTTTTTATAGCTCCTTTCTTCTGTTCACTTAGTAGTGTTTAAAGTTAGTTATTACTGCATTTTAATTAAAAGGTAGTGTGTCAGTTGAAGTAACTAAAGCACTTCCACAGTTCATTAATATAAATTGTTGATAGTTTGTATTGTACCTAAATTTCTGTAGAAAAATGAAAATAAACTGTCCCATAATAACCTCTCAACATTGG] consensusID : consensus_2577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [ATGTGAAGAACTAGACACTCCGTCAGATATGTTTTCATCCAATGTTGAGAGGCTATTATGGGACAGTTTATTTTCATTTTTACTATCAGATGATATCTGGGTGACTTTTGTGGACTGAAACTTATTTTTATCATCCTCTGTGTGAAAGGAGGCACGACTGGTCAATTTATTTACAAATCTTTTCAAAAATCCGCTGTTTCTTTGAGAGTTTTCAAATTCTGGGAGACCAAACGACACATACCCACCAGACTCGCTTATTGACTTCATCAGAAGTAAC] [+] EMBL CD189148 [ATGTGAAGAACTAGACACTCCGTCAGATATGTTTTCATCCAATGTTGAGAGGCTATTATGGGACAGTTTATTTTCATTTTTACTATCAGATGATATCTGGGTGACTTTTGTGGACTGAAACTTATTTTTATCATCCTCTGTGTGAAAGGAGGCACGACTGGTCAATTTATTTACAAATCTTTTCAAAAATCCGCTGTTTCTTTGAGAGTTTTCAAATTCTGGGAGACCAAACGACACATACCCACCAGACTCGCTTATTGACTTCATCAGAAGTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2577#0 TTTTGAAAAAGGGTATCAGGAGTAACGTCTACGCATAACATCGGCTAATAAATCCCGACT 60 consensus_2577#1 ------------------------------------------------------------ consensus_2577#0 GTTCGTCCGATCTTATTCGTAACTCAATGTTTCGAATCAGTGAACGTGTTCATTATTGAT 120 consensus_2577#1 ------------ATGTGAAGAACTAGACACTCCG--TCAG-ATATGTTTTCATCCAATGT 45 * * **** * * ** **** * ** ***** * consensus_2577#0 TGAAAACCTTTGAAGATACACTAATTTATTTTACCGTAAATGTTGAAAAATACATTGCTT 180 consensus_2577#1 TGAGAGGCTATTATGGGACAGT--TTATTTTCATTTTTACTATCAGATGATATCTGGGTG 103 *** * ** * * * *** * ** *** * * * * * * *** * * * consensus_2577#0 CATCCTTGTTCTGTATACATTCATGTCTTCAATCCTGTCCAATTTTAATGTTCTACTTTC 240 consensus_2577#1 ----------------ACTTTTGTGGACTGAAACTTATTT--TTATCATCCTCTGTGTGA 145 ** ** ** * ** * * * ** * ** *** * consensus_2577#0 GTCGATTATCTACTGCTGATGCTTTTTTTATAGCTCCTTTCTTCTGTTCACTTAGTAGTG 300 consensus_2577#1 AAGGAGGCACGACTG--GTCAATTTATTTACAAATCTTTTCAAAAATCCGCT--GTTTCT 201 ** * **** * *** **** * ** **** * * ** ** consensus_2577#0 TTTAAAGTTAGTTATTACTGCATTTTAATTAAAAGGTAGTGTGTCAGTTGAAGTAACTAA 360 consensus_2577#1 TTGAGAGTTTTCAAATTCTGGGA---GACCAAACGACA-CATACCCACCAGACTCGCTTA 257 ** * **** * * *** * *** * * * * * * ** * consensus_2577#0 AGCACTTCCACAGTTCATTAATATAAATTGTTGATAGTTTGTATTGTACCTAAATTTCTG 420 consensus_2577#1 TTGACTTCATCAGA--AGTAAC-------------------------------------- 277 ***** *** * *** consensus_2577#0 TAGAAAAATGAAAATAAACTGTCCCATAATAACCTCTCAACATTGG 466 consensus_2577#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||