cluster # 258

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Schistosoma mansoni
cluster # 258 cluster # 258 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_258#0 length = 288 sequences # 1

consensus_258#1 length = 270 sequences # 1

consensusID : consensus_258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [TTTCGAGCAAAGGBTATAAATTGTGAAAATAAGTTGAATAAGCCGTCTTCATTCTCTTTCATTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGGAAATTCTAAGTTTGAGTGTACAGGACATAGAGAAGGGGATGTATTATTTTTCACTGACAATTAGAATTTAAGCATTCCCTCCTTTTTTTTAAAAAAAACTTGGAACCCTTTTTATAGATTTATTTTGTTAATAAAATTTACTGGCCTTGGAGATTTATTCTTTAAATGTTAA]

[+] EMBL AI739686             [TTTCGAGCAAAGGBTATAAATTGTGAAAATAAGTTGAATAAGCCGTCTTCATTCTCTTTCATTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGGAAATTCTAAGTTTGAGTGTACAGGACATAGAGAAGGGGATGTATTATTTTTCACTGACAATTAGAATTTAAGCATTCCCTCCTTTTTTTTAAAAAAAACTTGGAACCCTTTTTATAGATTTATTTTGTTAATAAAATTTACTGGCCTTGGAGATTTATTCTTTAAATGTTAA]




>consensus_258#0
TTTCGAGCAAAGGBTATAAATTGTGAAAATAAGTTGAATAAGCCGTCTTCATTCTCTTTC
ATTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGGAAAT
TCTAAGTTTGAGTGTACAGGACATAGAGAAGGGGATGTATTATTTTTCACTGACAATTAG
AATTTAAGCATTCCCTCCTTTTTTTTAAAAAAAACTTGGAACCCTTTTTATAGATTTATT
TTGTTAATAAAATTTACTGGCCTTGGAGATTTATTCTTTAAATGTTAA

consensusID : consensus_258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [TTTCGGCAGCACGCTTTAAATTGTGAAAATAAGTTGAATAAGCGTTCTTCCTACTGCTTTCTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGAATTCTAAGTTTGAGTGTACAGGACATAGAAGAAGGGGAATGTATTAATTTTCACCTGACATTAGATTTAAGCATTCCCTCCATTTTTTTGATATAAACTTGGGCACCTTTTATAGATTAATTTTGGTCAGTAAAAATGCGTGGCCCTTGAGAGGT]

[+] EMBL AI739684             [TTTCGGCAGCACGCTTTAAATTGTGAAAATAAGTTGAATAAGCGTTCTTCCTACTGCTTTCTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGAATTCTAAGTTTGAGTGTACAGGACATAGAAGAAGGGGAATGTATTAATTTTCACCTGACATTAGATTTAAGCATTCCCTCCATTTTTTTGATATAAACTTGGGCACCTTTTATAGATTAATTTTGGTCAGTAAAAATGCGTGGCCCTTGAGAGGT]




>consensus_258#1
TTTCGGCAGCACGCTTTAAATTGTGAAAATAAGTTGAATAAGCGTTCTTCCTACTGCTTT
CTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGAATTCT
AAGTTTGAGTGTACAGGACATAGAAGAAGGGGAATGTATTAATTTTCACCTGACATTAGA
TTTAAGCATTCCCTCCATTTTTTTGATATAAACTTGGGCACCTTTTATAGATTAATTTTG
GTCAGTAAAAATGCGTGGCCCTTGAGAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_258#0      TTTCGAGCAAAGGBTATAAATTGTGAAAATAAGTTGAATAAGCCGTCTTCATTCTCTTTC 60
consensus_258#1      TTTCGGCAGCACGCTTTAAATTGTGAAAATAAGTTGAATAAGCGTTCTTCCTACTGCTTT 60
                     *****     * * * ***************************  ***** * **  ** 

consensus_258#0      ATTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGGAAAT 120
consensus_258#1      -CTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTG--AAT 117
                       *****************************************************  ***

consensus_258#0      TCTAAGTTTGAGTGTACAGGACATAGAGAAGGGG--ATGTATTATTTTTCACTGACAATT 178
consensus_258#1      TCTAAGTTTGAGTGTACAGGACATAGAAGAAGGGGAATGTATTAATTTTCACCTGACATT 177
                     ***************************  * ***  ******** *******     ***

consensus_258#0      AGAATTTAAGCATTCCCTCCTTTTTTTTAAAAAAAACTTGGAACCCTTTTTATAGATTTA 238
consensus_258#1      AGA-TTTAAGCATTCCCTCCATTTTTTTGATATAAACTTGGG-CACCTTTTATAGATTAA 235
                     *** **************** ******* * * ********  * * *********** *

consensus_258#0      TTTTG-TTAATAAAATTTACTGGCCTTGGAGATTTATTCTTTAAATGTTAA 288
consensus_258#1      TTTTGGTCAGTAAAAATGCGTGGCCCTTGAGAGGT---------------- 270
                     ***** * * ***** *   ***** * ****  *