These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [CAAGTGATCTTTCTATAGAGAAGTTTGTTCTTCCAGATGGTTCATGTCTAGACTACCAGTTGATGTAGTTTTCACGTGTTTGACAGTCATTCCAGCCATTTGAGCACTAGCAGGATTCGTCCCATGTGCTGAGGTAGGGATTAAACAAATTGTACGTTTGTGTTCACCTTTCCTATCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGTGCAAGACAAACATAATCATAGCCAGTTATCTCTTTGATGTCATTTTCCAGTTGTGCAATCAATTCCAAATAACCAGTAACTTGTTTTTTCGGTACAAAAGGATGCA] [+] EMBL CD197795 [CAAGTGATCTTTCTATAGAGAAGTTTGTTCTTCCAGATGGTTCATGTCTAGACTACCAGTTGATGTAGTTTTCACGTGTTTGACAGTCATTCCAGCCATTTGAGCACTAGCAGGATTCGTCCCATGTGCTGAGGTAGGGATTAAACAAATTGTACGTTTGTGTTCACCTTTCCTATCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGTGCAAGACAAACATAATCATAGCCAGTTATCTCTTTGATGTCATTTTCCAGTTGTGCAATCAATTCCAAATAACCAGTAACTTGTTTTTTCGGTACAAAAGGATGCA] consensusID : consensus_2588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [TTTCGAATTGATTACTGGATAATAAGTAATCCGATTAAAAGGTTTGTTCAGCCTCCTTTACGAAAAATGTTTATAATACTTGTAGCCAACTCAGCTCAAAATGAACATAAGAACCATAACCACTCACTGTACGTTTGTGTTCACCTTTCCTATCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGTGCAAGACAAACATAATCATAGCCAGT] [-] EMBL CD090213 [TTTCGAATTGATTACTGGATAATAAGTAATCCGATTAAAAGGTTTGTTCAGCCTCCTTTACGAAAAATGTTTATAATACTTGTAGCCAACTCAGCTCAAAATGAACATAAGAACCATAACCACTCACTGTACGTTTGTGTTCACCTTTCCTATCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGTGCAAGACAAACATAATCATAGCCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2588#0 CAAGTGATCTTTCTATAGAGAAGTTTGTTCTTCCAGATGGTTCATGTCTAGACTACCAG- 59 consensus_2588#1 ---------------TTTCGAA--TTGAT-TACTGGATAATAAGTAATCCGATTAAAAGG 42 * *** *** * * * *** * * ** ** ** consensus_2588#0 TTGATGTAGTTTTCACGTGTTTGACAGTCATTCCAGCCATTTGAGCACTAGCAGGATTCG 119 consensus_2588#1 TTTGTTCAGCCTCC---TTTACGAAAAATGTTTATAATACTTG-----TAGCCAACTCAG 94 ** * ** * * * * ** * ** * *** **** * * consensus_2588#0 TCCCATGTGCTGAGGTAGGGATTA-AACAA---ATTGTACGTTTGTGTTCACCTTTCCTA 175 consensus_2588#1 CTCAAAATG--AACATAAGAACCATAACCACTCACTGTACGTTTGTGTTCACCTTTCCTA 152 * * ** * ** * * * *** * * ************************* consensus_2588#0 TCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGT 235 consensus_2588#1 TCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGT 212 ************************************************************ consensus_2588#0 GCAAGACAAACATAATCATAGCCAGTTATCTCTTTGATGTCATTTTCCAGTTGTGCAATC 295 consensus_2588#1 GCAAGACAAACATAATCATAGCCAGT---------------------------------- 238 ************************** consensus_2588#0 AATTCCAAATAACCAGTAACTTGTTTTTTCGGTACAAAAGGATGCA 341 consensus_2588#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||