These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [TAGTTAACCGTGTTCATTCATACAAAACTGTATGGGGGTTATTGAATATTATGAAATTGTTTAAACTGTAGTAGTTGGGTTTGTTTACACTTATTACTTCATGTTGCTGTTCCACAATTCAAAGTACCTATTACAAACTATCTTTAAATTGCTGTCAGAAGAGTAATCATTCATTTCTGAAGAATCTCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGATGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCTATTTTAACTGAAGCTGTGCCACGGTTACAATCATATGAAATTGCATCTACGGTTCAGAATAAATCAAAATCTGTTGATTTGAATACATCACTAACAGCTGTAGATACAAAATCACCCAATATTGTCGTAAAGAAAATTAAAGATCACAATTTGCCGATGAATGATTTGATCACTCCATTAGTTAATCATCTTACAAGCATATTAAACATGGAGCAAAATTTGAAACANATAGAAGCANATACAAATCAAGCAAATGTTCTAGAGTCTGATACAGGTAGTGATCTGGAAT] [+] EMBL CD090236 [TAGTTAACCGTGTTCATTCATACAAAACTGTATGGGGGTTATTGAATATTATGAAATTGTTTAAACTGTAGTAGTTGGGTTTGTTTACACTTATTACTTCATGTTGCTGTTCCACAATTCAAAGTACCTATTACAAACTATCTTTAAATTGCTGTCAGAAGAGTAATCATTCATTTCTGAAGAATCTCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGATGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCTATTTTAACTGAAGCTGTGCCACGGTTACAATCATATGAAATTGCATCTACGGTTCAGAATAAATCAAAATCTGTTGATTTGAATACATCACTAACAGCTGTAGATACAAAATCACCCAATATTGTCGTAAAGAAAATTAAAGATCACAATTTGCCGATGAATGATTTGATCACTCCATTAGTTAATCATCTTACAAGCATATTAAACATGGAGCAAAATTTGAAACANATAGAAGCANATACAAATCAAGCAAATGTTCTAGAGTCTGATACAGGTAGTGATCTGGAAT] consensusID : consensus_2591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [TAATAACATATAAAGCATCAATTTTGCGCGAAATCAACTGGTTGTTTGCAAACTCTCAATAGAAATGTGTCAAACACGGATCTTTATGAAGGACCCCAATTTATTATTCTTGATGCTTTATATAAGCTTGGTCATAGTAATGGGCAGTCTGATTTCGATTCCGTTCACAAAGTATTTTCTCGTCTTCATCTAAATGCAGTCCATTTCGATTATTTGTTCATAAAAGCAGACCCGTCAAGAACAGTTGGTGGTGACAACAGGTCATTATTTGCTCGAGTTGCTGAAGCCCGAGAATCTCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGATGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCT] [+] EMBL CD116248 [TAATAACATATAAAGCATCAATTTTGCGCGAAATCAACTGGTTGTTTGCAAACTCTCAATAGAAATGTGTCAAACACGGATCTTTATGAAGGACCCCAATTTATTATTCTTGATGCTTTATATAAGCTTGGTCATAGTAATGGGCAGTCTGATTTCGATTCCGTTCACAAAGTATTTTCTCGTCTTCATCTAAATGCAGTCCATTTCGATTATTTGTTCATAAAAGCAGACCCGTCAAGAACAGTTGGTGGTGACAACAGGTCATTATTTGCTCGAGTTGCTGAAGCCCGAGAATCTCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGATGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2591#0 ------------------------------------------------------------ consensus_2591#1 TAATAACATATAAAGCATCAATTTTGCGCGAAATCAACTGGTTGTTTGCAAACTCTCAAT 60 consensus_2591#0 ----------------------------------------TAGTTAACCGTGTTCATTCA 20 consensus_2591#1 AGAAATGTGTCAAACACGGATCTTTATGAAGGACCCCAATTTATTATTCTTGATGCTTTA 120 * *** * ** * ** * consensus_2591#0 TACAAAACTGTATGGGGGTTATTGAATATTATGAAATTGTTTAAACTGTAGTAGT-TGGG 79 consensus_2591#1 TATAAGCTTGGTCATAG--TAATGGGCAGTCTGATTTCGATTCCGTTCACAAAGTATTTT 178 ** ** ** * ** ** * * *** * * ** * *** * consensus_2591#0 TTTGTTTACACTTAT---TACTTCATGTTGCTGTTCCACAATTCAAAGTA--CCTATTAC 134 consensus_2591#1 CTCGTCTTCATCTAAATGCAGTCCATTTCGATTATTTGTTCATAAAAGCAGACCCGTCAA 238 * ** * ** ** * * *** * * * * * **** * ** * * consensus_2591#0 AAACTATCTTTAAATTGCTGTCAGAAGAGTAATCATTCA--TTTCTGAAG------AATC 186 consensus_2591#1 GAACAGTTGGTGG--TGACAACAGGTCATTATTTGCTCGAGTTGCTGAAGCCCGAGAATC 296 *** * * ** *** * ** * ** ** ****** **** consensus_2591#0 TCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGA 246 consensus_2591#1 TCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGA 356 ************************************************************ consensus_2591#0 TGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCTAT 306 consensus_2591#1 TGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCT-- 414 ********************************************************** consensus_2591#0 TTTAACTGAAGCTGTGCCACGGTTACAATCATATGAAATTGCATCTACGGTTCAGAATAA 366 consensus_2591#1 ------------------------------------------------------------ consensus_2591#0 ATCAAAATCTGTTGATTTGAATACATCACTAACAGCTGTAGATACAAAATCACCCAATAT 426 consensus_2591#1 ------------------------------------------------------------ consensus_2591#0 TGTCGTAAAGAAAATTAAAGATCACAATTTGCCGATGAATGATTTGATCACTCCATTAGT 486 consensus_2591#1 ------------------------------------------------------------ consensus_2591#0 TAATCATCTTACAAGCATATTAAACATGGAGCAAAATTTGAAACANATAGAAGCANATAC 546 consensus_2591#1 ------------------------------------------------------------ consensus_2591#0 AAATCAAGCAAATGTTCTAGAGTCTGATACAGGTAGTGATCTGGAAT 593 consensus_2591#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||