These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [GTGAGGGCTTGACTTTCGACGACGTTGTGTGATTTCCTCAGAGTTTGTCCTATACACTTCTAGCGCTTCTTCTTGATTTCTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGATAGTATCTGACCAACAAATCCGAAGTATCTTTCGTACACAACTGTTAATAAACACCTGCCTATACTTATTAATAAAAAATAAGGTATTTAATTGTTCTCTTCATTTCTACATTGATAAACATAAAATGGATCATTTAAAAGGATCAGCCAAAACTTTGTTTAAACTATGAGGAAAATATAACAGCCAAATAAATGATGCCTACGTAAAAATGAAGATTATGAATTAAGTATGGTTATTGTTTACATCTTACAAAATATATGCTTGAACGTGAATAACTAAAGACAAATAAAGAGATGTTAAATTATAGAACGAGTTCTATTACACTATATACCTTTTAAT] [+] EMBL CD066571 [GTGAGGGCTTGACTTTCGACGACGTTGTGTGATTTCCTCAGAGTTTGTCCTATACACTTCTAGCGCTTCTTCTTGATTTCTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGATAGTATCTGACCAACAAATCCGAAGTATCTTTCGTACACAACTGTTAATAAACACCTGCCTATACTTATTAATAAAAAATAAGGTATTTAATTGTTCTCTTCATTTCTACATTGATAAACATAAAATGGATCATTTAAAAGGATCAGCCAAAACTTTGTTTAAACTATGAGGAAAATATAACAGCCAAATAAATGATGCCTACGTAAAAATGAAGATTATGAATTAAGTATGGTTATTGTTTACATCTTACAAAATATATGCTTGAACGTGAATAACTAAAGACAAATAAAGAGATGTTAAATTATAGAACGAGTTCTATTACACTATATACCTTTTAAT] consensusID : consensus_2651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [TCTTTCATCTTCCGCTTTTCCTCTGGCATTCAGGACTCCATGTGAGGGCTTGACTTTCGACGACGTTGTGTGATTTCCTCAGTGTTTGTCCTATCCACTTCTAGCGCTTCTTCTTGATTTCTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGACAGTATCTGACCAACAAATCCGAAGTATCTTTCGTAGACAACTGTTAATAAACACCTGCATATTTGGACACTGGATCATATGAGAGAAGACTTGTTATTTCCCTGGAGATCGTAGCTATGTCCTACTGACGAATGCCAACTGATGTTAACATATATTTGTTTTTGCAGTTTAATTCATCATAAGCAAAGATAGATGATGGTTAGCAGTAGAATCCAGGACGCACGTTTCGTACTATACGGTACTCATCAGCTGGATGTACACGCATCCCAGTGTT] [-] EMBL CD189446 [TCTTTCATCTTCCGCTTTTCCTCTGGCATTCAGGACTCCATGTGAGGGCTTGACTTTCGACGACGTTGTGTGATTTCCTCAGTGTTTGTCCTATCCACTTCTAGCGCTTCTTCTTGATTTCTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGACAGTATCTGACCAACAAATCCGAAGTATCTTTCGTAGACAACTGTTAATAAACACCTGCATATTTGGACACTGGATCATATGAGAGAAGACTTGTTATTTCCCTGGAGATCGTAGCTATGTCCTACTGACGAATGCCAACTGATGTTAACATATATTTGTTTTTGCAGTTTAATTCATCATAAGCAAAGATAGATGATGGTTAGCAGTAGAATCCAGGACGCACGTTTCGTACTATACGGTACTCATCAGCTGGATGTACACGCATCCCAGTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2651#0 -----------------------------------------GTGAGGGCTTGACTTTCGA 19 consensus_2651#1 TCTTTCATCTTCCGCTTTTCCTCTGGCATTCAGGACTCCATGTGAGGGCTTGACTTTCGA 60 ******************* consensus_2651#0 CGACGTTGTGTGATTTCCTCAGAGTTTGTCCTATACACTTCTAGCGCTTCTTCTTGATTT 79 consensus_2651#1 CGACGTTGTGTGATTTCCTCAGTGTTTGTCCTATCCACTTCTAGCGCTTCTTCTTGATTT 120 ********************** *********** ************************* consensus_2651#0 CTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGATAGTATCTG 139 consensus_2651#1 CTTCCTCAACTGAAATCTGGTTTGTTGTCTCGCACAGTAGAATGTTGCTGACAGTATCTG 180 *************************************************** ******** consensus_2651#0 ACCAACAAATCCGAAGTATCTTTCGTACACAACTGTTAATAAACACCTGCCTATACTTAT 199 consensus_2651#1 ACCAACAAATCCGAAGTATCTTTCGTAGACAACTGTTAATAAACACCTGCATAT-TTGGA 239 *************************** ********************** *** * consensus_2651#0 TAATAAAAAATAAGGTATTTAA-TTGTTCTCTTCATTTCTACATTGATAAACATAAAATG 258 consensus_2651#1 CACTGGATCATATGAGAGAAGACTTGTTATTTCCCTGGAGATCGTAGCTATGTCCTACTG 299 * * * *** * * * ***** * * * * * * * * ** consensus_2651#0 GATCATTTAAAAGGAT-CAGCCAAAACTTTGTTTAAACTATGAGGAAAATATAACAGCCA 317 consensus_2651#1 ACGAATGCCAACTGATGTTAACATATATTTGTTTTTGCAGTTTAATTCATCATAAGCAAA 359 ** ** *** ** * ******* * * ** * * consensus_2651#0 AATAAATGATGCCTA-CGTAAAAATGAAGATTATGAATTAAGTATGGTTATTGTTTACAT 376 consensus_2651#1 GATAGATGATGGTTAGCAGTAGAATCCAGGACGCACGTTTCGTACTAT-ACGGTACTCAT 418 *** ****** ** * * *** ** ** *** * * ** *** consensus_2651#0 CTTACAAAATATATGCTTGAACGTGAATAACTAAAGACAAATAAAGAGATGTTAAATTAT 436 consensus_2651#1 CA-GCTGGATGTACACGCATCCCAGTGTT------------------------------- 446 * * ** ** * * * * consensus_2651#0 AGAACGAGTTCTATTACACTATATACCTTTTAAT 470 consensus_2651#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||