These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [GAGAATTTACACAAACGTTCATTATTTTGTTTTAACAACTTAACTTACTGAGATGAATTTCATCACTTTAGTGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTAGTATGAAGCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTTGAGATGAATAAAATTAAACGGAGAGGGAAACAGAGAGCAATTATTATAACAACAGAAATTGAAAGGATCATTGATGTAAAGAAAATAATGAAGGAAAGATTGTGCAAATAAGGTATTTAAATGTATAGTTT] [+] EMBL CD092320 [GAGAATTTACACAAACGTTCATTATTTTGTTTTAACAACTTAACTTACTGAGATGAATTTCATCACTTTAGTGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTAGTATGAAGCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTTGAGATGAATAAAATTAAACGGAGAGGGAAACAGAGAGCAATTATTATAACAACAGAAATTGAAAGGATCATTGATGTAAAGAAAATAATGAAGGAAAGATTGTGCAAATAAGGTATTTAAATGTATAGTTT] consensusID : consensus_2706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [ATTTTATATAAACGTTCATTATTTTGTTTTACAACTTAACTTATGAGATGAATTTCATCACTTTAATGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTGGTATGAAGCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTGAGAAGATTAAATTAAACGGAGAGGGAANACAGAGAGCATTATAATAACAACAGAATTGAAAGGATCATGATGTACAGAATAAATGAAGGAAGATGTGCAAATAAGGTATTTAATGTATAGT] [+] EMBL CD120478 [ATTTTATATAAACGTTCATTATTTTGTTTTACAACTTAACTTATGAGATGAATTTCATCACTTTAATGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTGGTATGAAGCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTGAGAAGATTAAATTAAACGGAGAGGGAANACAGAGAGCATTATAATAACAACAGAATTGAAAGGATCATGATGTACAGAATAAATGAAGGAAGATGTGCAAATAAGGTATTTAATGTATAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2706#0 GAGAATTTACACAAACGTTCATTATTTTGTTTTAACAACTTAACTTACTGAGATGAATTT 60 consensus_2706#1 ---ATTTTATATAAACGTTCATTATTTTGTTTTA-CAACTTAACTTA-TGAGATGAATTT 55 * **** * ********************** ************ ************ consensus_2706#0 CATCACTTTAGTGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTAGTATGAA 120 consensus_2706#1 CATCACTTTAATGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTGGTATGAA 115 ********** ***************************************** ******* consensus_2706#0 GCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTTGAGATGAATAAAATTAAACGG 180 consensus_2706#1 GCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATT-GAGAAGA-TTAAATTAAACGG 173 ************************************** **** ** * *********** consensus_2706#0 AGAGGGAAA-CAGAGAGCAATTATTATAACAACAGAAATTGAAAGGATCATTGATGTAAA 239 consensus_2706#1 AGAGGGAANACAGAGAGCA-TTATAATAACAACAGAA-TTGAAAGGATCAT-GATGTACA 230 ******** ********* **** ************ ************* ****** * consensus_2706#0 GAAAATAATGAAGGAAAGATTGTGCAAATAAGGTATTTAAATGTATAGTTT 290 consensus_2706#1 GAATA-AATGAAGGAAGA--TGTGCAAATAAGGTATTTAA-TGTATAGT-- 275 *** * ********** ******************** ******** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||