These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [CATAAATATGCATCACTCTTCTATACCGTGATTGAAGTTGGTGTGTATTTATATGTATAGAATTTAGCTAAATAGTGTAAGGAAATAGGGTTCGACATTTCCAGCAACCGGCTAATTTATTCCTAATTGTAATCTCAGTCATGGACAACTAAATGTTTTAAACACTCTCAGGCTTCCACTGAATAAGTTTGTGGGATTTTATTGTGTCCTCATTATATCTGCCGGAATCTATATTTCTTACATCTTATAATGTGTAGTATATCCACAGCGCTAATCTTTTGTTCTTTCATTAGTCTAGTGTGATTTCATTTGAATTTATTCACATTAGTTTTGTGTAGATACTTCCTTATTGCTATGTCTAACTNTGAGTTTGATTTATTTAAAGCTTGCTCAACGAGAAACTCAACTCCTGAATGGTATCACTTCGTTACGACCTCCTTCACTGCCTATTGTAAGTGGAGATTNTAACTATTCTGATAT] [+] EMBL CD066904 [CATAAATATGCATCACTCTTCTATACCGTGATTGAAGTTGGTGTGTATTTATATGTATAGAATTTAGCTAAATAGTGTAAGGAAATAGGGTTCGACATTTCCAGCAACCGGCTAATTTATTCCTAATTGTAATCTCAGTCATGGACAACTAAATGTTTTAAACACTCTCAGGCTTCCACTGAATAAGTTTGTGGGATTTTATTGTGTCCTCATTATATCTGCCGGAATCTATATTTCTTACATCTTATAATGTGTAGTATATCCACAGCGCTAATCTTTTGTTCTTTCATTAGTCTAGTGTGATTTCATTTGAATTTATTCACATTAGTTTTGTGTAGATACTTCCTTATTGCTATGTCTAACTNTGAGTTTGATTTATTTAAAGCTTGCTCAACGAGAAACTCAACTCCTGAATGGTATCACTTCGTTACGACCTCCTTCACTGCCTATTGTAAGTGGAGATTNTAACTATTCTGATAT] consensusID : consensus_2731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CGAGGGTAACAAGTTGATGAAGGGAATGAGCTTGCTCAACGAGAAACTCAACTCCTGAATGGTATCACTTCGTTACGACCTCCTTCACTGCCTATTGATCCCTATTGGAGTCCAGTAGATATACAACTTGCTTGTCATGCTATCGGTAAATTAGGACGTGATTATAAAGGTATCGCTGAGTGTTTATTAAATAAAACTCCAAGTATGGTAGCTACATTAATAGAAATGCATGGACAACACTTGAATTTGAATCAATTAGCATCAATGGCTCCAATTATCATACTTTAATAATATTTTTCCTACATACATTTATATAAATACTTTATTTATAAATAGTAAAAAAGAAAACGAGTTATCCAGTTTCTGTAAATGTTTTCCATGTTTTGTTGTTGTTGTTGTTGTCATTCCAG] [+] EMBL CD084013 [CGAGGGTAACAAGTTGATGAAGGGAATGAGCTTGCTCAACGAGAAACTCAACTCCTGAATGGTATCACTTCGTTACGACCTCCTTCACTGCCTATTGATCCCTATTGGAGTCCAGTAGATATACAACTTGCTTGTCATGCTATCGGTAAATTAGGACGTGATTATAAAGGTATCGCTGAGTGTTTATTAAATAAAACTCCAAGTATGGTAGCTACATTAATAGAAATGCATGGACAACACTTGAATTTGAATCAATTAGCATCAATGGCTCCAATTATCATACTTTAATAATATTTTTCCTACATACATTTATATAAATACTTTATTTATAAATAGTAAAAAAGAAAACGAGTTATCCAGTTTCTGTAAATGTTTTCCATGTTTTGTTGTTGTTGTTGTTGTCATTCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2731#0 CATAAATATGCATCACTCTTCTATACCGTGATTGAAGTTGGTGTGTATTTATATGTATAG 60 consensus_2731#1 -----------------CGAGGGTAACAAGTTGATGAAGGGAATGAGCTTGCTCAACGAG 43 * ** * * * ** ** ** ** consensus_2731#0 AATTTAGCTAAATAGTGTAAGGAAATAGGGTTCGACATTTCCAGCAACCGGCTAATTTAT 120 consensus_2731#1 AA---ACTCAACTCCTGAATGGTATCACTTCGTTACGACCTCCTTCACTGCCTA--TTGA 98 ** * ** * ** * ** * * ** * ** * *** ** consensus_2731#0 TCCTAATTGTAATCTCAGTCATGGACAACTAAATGTTTTAAACACTCTCAGGCTTCCACT 180 consensus_2731#1 TCCCTATTGGAGTCCAGTAGATATACAACT---TGCTTGTCATGCTATCGGTAAATTAGG 155 *** **** * ** ** ****** ** ** * ** ** * * consensus_2731#0 GAATAAGTTTGTGGGATTTTATTGTGTCCTCATTATATCTGCCGGAATCTATATTTCTTA 240 consensus_2731#1 ACGTGATTATAAAGG-TATCGCTGAGTGTTTATTAAATAAAACTCCAAGTATGGTAGCTA 214 * * * * ** * * ** ** * **** ** * * *** * ** consensus_2731#0 CATCTTATAATGTGTAGTATATCCACAGCGCTAATCTTTTGTTCTTTCATTAGTCTAGTG 300 consensus_2731#1 CAT----TAATA-GAAATGCATGGACAACACTTGAATTTGAATCA---ATTAGCATCAAT 266 *** **** * * * ** *** * ** *** ** ***** * consensus_2731#0 TGATTTCATTTGAATTTATTCACATTAGTTTTGTGTAGATACTTCCTTATTGCTATGTCT 360 consensus_2731#1 GGCTCCAATTATCATACTTTAATAATA-TTTTTCCTACATACATTTATATAAATAC-TTT 324 * * *** ** ** * * ** **** ** **** * *** ** * * consensus_2731#0 AACTNTGAGTTTGATTTATTTAAAGCTTGCTCAACGAGAAACTCAACTCCTG--AATGGT 418 consensus_2731#1 ATTTATAAAT-------AGTAAAAA---AGAAAACGAGTTATCCAGTTTCTGTAAATGTT 374 * * * * * * * *** ****** * ** * *** **** * consensus_2731#0 ATCACTTCGTTACGACCTCCTTCACTGCCTATTGTAAGTGGAGATTNTAACTATTCTGAT 478 consensus_2731#1 TTCCATGTTTTGTTGTTGTTGTTGTTGTC-ATTCCAG----------------------- 410 ** * ** * ** * *** * consensus_2731#0 AT 480 consensus_2731#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||