These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [GGTTTTATGATGATCATCTAGATTGTTTCTAATGAAACAGTCCAAGATTATAAGTGCTGTTATTACTGTTGTTTTGTTGTATGTCTGTGATAAGATGTATTCTGTTTGTTCTTTGAGTGTTACTACTGAAGTCACCTTTGAACCTACAACCTATTGATTGAAGGTGGATTGTGTAAATCACTAAGCTTCATCTCTTTTGGATGGGAAACTAAATATCTGATGTCATTTTAATGATAAAGTACTTTTATGGTCAAAAAAATCAGTATTGTATAATCTTTTATTAATGTTGACTTTTATTCAACATTGAAATGAGCAAGATCATATTATCGATGTTTTCATTTGTATTATTATTATTTAAACACATAAATATTGGTACAAGGAAGCACCAGATACATATGCGCCGCACAAATC] [+] EMBL CD069754 [GGTTTTATGATGATCATCTAGATTGTTTCTAATGAAACAGTCCAAGATTATAAGTGCTGTTATTACTGTTGTTTTGTTGTATGTCTGTGATAAGATGTATTCTGTTTGTTCTTTGAGTGTTACTACTGAAGTCACCTTTGAACCTACAACCTATTGATTGAAGGTGGATTGTGTAAATCACTAAGCTTCATCTCTTTTGGATGGGAAACTAAATATCTGATGTCATTTTAATGATAAAGTACTTTTATGGTCAAAAAAATCAGTATTGTATAATCTTTTATTAATGTTGACTTTTATTCAACATTGAAATGAGCAAGATCATATTATCGATGTTTTCATTTGTATTATTATTATTTAAACACATAAATATTGGTACAAGGAAGCACCAGATACATATGCGCCGCACAAATC] consensusID : consensus_274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [TTCTACTAATACATATTTAACGATAACTCGACGCACACGACAACGCACACTGACTTCGCTTTTCATGATCATTATCATTAGCAGTACAGCAGTGAATATCACCCGTTGATTCAGTCATCATCCTACGGCTGGATTATTTTTTATCCCACATGAAATCCAGGCGTATAAATCCGGATCTACTCATCGCTGAATCGACGCTATTTACTCTACTGCGGCTTATCAGAACATATCCCACTGTGCTTTATGCTCATATGCAGGCAGCACCACGCAGCACCTACTGTTATACTCTATTTTCACGATATTTCGATTCGCGCGTATTAACCTGTT] [+] EMBL CD183427 [TTCTACTAATACATATTTAACGATAACTCGACGCACACGACAACGCACACTGACTTCGCTTTTCATGATCATTATCATTAGCAGTACAGCAGTGAATATCACCCGTTGATTCAGTCATCATCCTACGGCTGGATTATTTTTTATCCCACATGAAATCCAGGCGTATAAATCCGGATCTACTCATCGCTGAATCGACGCTATTTACTCTACTGCGGCTTATCAGAACATATCCCACTGTGCTTTATGCTCATATGCAGGCAGCACCACGCAGCACCTACTGTTATACTCTATTTTCACGATATTTCGATTCGCGCGTATTAACCTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_274#0 GGTTTTATGATGATCATCTAGATTGTTTCTAATGAAACAGTCCAAGATTATAAGTGCTGT 60 consensus_274#1 ---------------------------------------------TTCTACTAATAC-AT 14 ** * * * * consensus_274#0 TATTACTGTTGTTTTGTTGTATGTCTGTGATAAGATGTATTCTGTTTGTTCTT--TGAGT 118 consensus_274#1 ATTTAACGATAACTCGACGCACAC----GACAACGCACACTGACTTCGCTTTTCATGATC 70 *** * * * * * * ** ** * * ** * * ** *** consensus_274#0 GTTACTACTGAAGTCACCTTTGAACCTACAACCTATTGATTGAAGGTGGATTGTGTAAAT 178 consensus_274#1 ATTATCATTAGCAGTACAGCAGTGAATATCACCCGTTGATTCAGTCATCATCCTACGGCT 130 *** * * ** * ** *** ****** * ** * * consensus_274#0 C-ACTAAGCTTCATCTCTTTTGGATGGGAAAC-TAAATATCTGATGTCATTTTAATGATA 236 consensus_274#1 GGATTATTTTTTATCCCACATGAAATCCAGGCGTATAAATCCGG-ATCTACTCATCGCTG 189 * ** ** *** * ** * * * ** * *** * ** * * * * consensus_274#0 AAGTACTTTTATGGTCAAAAAAATCAGTATTGTATAATCTTTTATTAATGTTGACTTTTA 296 consensus_274#1 AATCGACGCTAT--TTACTCTACTGCGGCTTATCAGAACATATCCCACTGT-GCTTTATG 246 ** *** * * * * * ** * * * * * * *** * ** * consensus_274#0 TTCAACATTGAAATGAGCAAGATCATATTATCGA-TGTTTTCATTTGTATTATTATTATT 355 consensus_274#1 CTCATA--TGCAGGCAGCACCA-CGCAGCACCTACTGTTATACTCTATTTTCACGATATT 303 *** ** * **** * * * * * * **** * * * * ** **** consensus_274#0 TAAACACATAAATATTGGTACAAGGAAGCACCAGATACATATGCGCCGCACAAATC 411 consensus_274#1 TCGATTCGCGCGTATTAACCTGTT-------------------------------- 327 * * * **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||