cluster # 274

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Schistosoma mansoni
cluster # 274 cluster # 274 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_274#0 length = 411 sequences # 1

consensus_274#1 length = 327 sequences # 1

consensusID : consensus_274#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [GGTTTTATGATGATCATCTAGATTGTTTCTAATGAAACAGTCCAAGATTATAAGTGCTGTTATTACTGTTGTTTTGTTGTATGTCTGTGATAAGATGTATTCTGTTTGTTCTTTGAGTGTTACTACTGAAGTCACCTTTGAACCTACAACCTATTGATTGAAGGTGGATTGTGTAAATCACTAAGCTTCATCTCTTTTGGATGGGAAACTAAATATCTGATGTCATTTTAATGATAAAGTACTTTTATGGTCAAAAAAATCAGTATTGTATAATCTTTTATTAATGTTGACTTTTATTCAACATTGAAATGAGCAAGATCATATTATCGATGTTTTCATTTGTATTATTATTATTTAAACACATAAATATTGGTACAAGGAAGCACCAGATACATATGCGCCGCACAAATC]

[+] EMBL CD069754             [GGTTTTATGATGATCATCTAGATTGTTTCTAATGAAACAGTCCAAGATTATAAGTGCTGTTATTACTGTTGTTTTGTTGTATGTCTGTGATAAGATGTATTCTGTTTGTTCTTTGAGTGTTACTACTGAAGTCACCTTTGAACCTACAACCTATTGATTGAAGGTGGATTGTGTAAATCACTAAGCTTCATCTCTTTTGGATGGGAAACTAAATATCTGATGTCATTTTAATGATAAAGTACTTTTATGGTCAAAAAAATCAGTATTGTATAATCTTTTATTAATGTTGACTTTTATTCAACATTGAAATGAGCAAGATCATATTATCGATGTTTTCATTTGTATTATTATTATTTAAACACATAAATATTGGTACAAGGAAGCACCAGATACATATGCGCCGCACAAATC]




>consensus_274#0
GGTTTTATGATGATCATCTAGATTGTTTCTAATGAAACAGTCCAAGATTATAAGTGCTGT
TATTACTGTTGTTTTGTTGTATGTCTGTGATAAGATGTATTCTGTTTGTTCTTTGAGTGT
TACTACTGAAGTCACCTTTGAACCTACAACCTATTGATTGAAGGTGGATTGTGTAAATCA
CTAAGCTTCATCTCTTTTGGATGGGAAACTAAATATCTGATGTCATTTTAATGATAAAGT
ACTTTTATGGTCAAAAAAATCAGTATTGTATAATCTTTTATTAATGTTGACTTTTATTCA
ACATTGAAATGAGCAAGATCATATTATCGATGTTTTCATTTGTATTATTATTATTTAAAC
ACATAAATATTGGTACAAGGAAGCACCAGATACATATGCGCCGCACAAATC

consensusID : consensus_274#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [TTCTACTAATACATATTTAACGATAACTCGACGCACACGACAACGCACACTGACTTCGCTTTTCATGATCATTATCATTAGCAGTACAGCAGTGAATATCACCCGTTGATTCAGTCATCATCCTACGGCTGGATTATTTTTTATCCCACATGAAATCCAGGCGTATAAATCCGGATCTACTCATCGCTGAATCGACGCTATTTACTCTACTGCGGCTTATCAGAACATATCCCACTGTGCTTTATGCTCATATGCAGGCAGCACCACGCAGCACCTACTGTTATACTCTATTTTCACGATATTTCGATTCGCGCGTATTAACCTGTT]

[+] EMBL CD183427             [TTCTACTAATACATATTTAACGATAACTCGACGCACACGACAACGCACACTGACTTCGCTTTTCATGATCATTATCATTAGCAGTACAGCAGTGAATATCACCCGTTGATTCAGTCATCATCCTACGGCTGGATTATTTTTTATCCCACATGAAATCCAGGCGTATAAATCCGGATCTACTCATCGCTGAATCGACGCTATTTACTCTACTGCGGCTTATCAGAACATATCCCACTGTGCTTTATGCTCATATGCAGGCAGCACCACGCAGCACCTACTGTTATACTCTATTTTCACGATATTTCGATTCGCGCGTATTAACCTGTT]




>consensus_274#1
TTCTACTAATACATATTTAACGATAACTCGACGCACACGACAACGCACACTGACTTCGCT
TTTCATGATCATTATCATTAGCAGTACAGCAGTGAATATCACCCGTTGATTCAGTCATCA
TCCTACGGCTGGATTATTTTTTATCCCACATGAAATCCAGGCGTATAAATCCGGATCTAC
TCATCGCTGAATCGACGCTATTTACTCTACTGCGGCTTATCAGAACATATCCCACTGTGC
TTTATGCTCATATGCAGGCAGCACCACGCAGCACCTACTGTTATACTCTATTTTCACGAT
ATTTCGATTCGCGCGTATTAACCTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_274#0      GGTTTTATGATGATCATCTAGATTGTTTCTAATGAAACAGTCCAAGATTATAAGTGCTGT 60
consensus_274#1      ---------------------------------------------TTCTACTAATAC-AT 14
                                                                     **  * * *  *

consensus_274#0      TATTACTGTTGTTTTGTTGTATGTCTGTGATAAGATGTATTCTGTTTGTTCTT--TGAGT 118
consensus_274#1      ATTTAACGATAACTCGACGCACAC----GACAACGCACACTGACTTCGCTTTTCATGATC 70
                       ***  * *   * *  * *       ** **     * *   ** * * **  ***  

consensus_274#0      GTTACTACTGAAGTCACCTTTGAACCTACAACCTATTGATTGAAGGTGGATTGTGTAAAT 178
consensus_274#1      ATTATCATTAGCAGTACAGCAGTGAATATCACCCGTTGATTCAGTCATCATCCTACGGCT 130
                      ***  * *      **    *    **  ***  ****** *      **  *     *

consensus_274#0      C-ACTAAGCTTCATCTCTTTTGGATGGGAAAC-TAAATATCTGATGTCATTTTAATGATA 236
consensus_274#1      GGATTATTTTTTATCCCACATGAAATCCAGGCGTATAAATCCGG-ATCTACTCATCGCTG 189
                       * **   ** *** *   ** *    *  * ** * *** *   **   * *  * * 

consensus_274#0      AAGTACTTTTATGGTCAAAAAAATCAGTATTGTATAATCTTTTATTAATGTTGACTTTTA 296
consensus_274#1      AATCGACGCTAT--TTACTCTACTGCGGCTTATCAGAACATATCCCACTGT-GCTTTATG 246
                     **       ***  * *    * *  *  ** *   * * * *   * *** *  ** * 

consensus_274#0      TTCAACATTGAAATGAGCAAGATCATATTATCGA-TGTTTTCATTTGTATTATTATTATT 355
consensus_274#1      CTCATA--TGCAGGCAGCACCA-CGCAGCACCTACTGTTATACTCTATTTTCACGATATT 303
                      ***    ** *   ****  * *  *  * * * **** *  * * * **     ****

consensus_274#0      TAAACACATAAATATTGGTACAAGGAAGCACCAGATACATATGCGCCGCACAAATC 411
consensus_274#1      TCGATTCGCGCGTATTAACCTGTT-------------------------------- 327
                     *  *  *     ****