These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATTTTATTCTGAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCAACTGCATGAGATACTGATTTCTAGAACGTCCNNNCATTATCCAAAGACGATCACATAGAAGACAACTTTTGGTGTAACCAGTTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAATACATATACTGGAGTGAAAAACTCAGTCTGATGATTGTATGTACATCAATCCTCTAAACAGAAAGATCGTAATTATAATTTANAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCTGGATAGATAACGTAATAGTTAAATACATANCACTATAAAATTTAATGAATAGTAATTTTGTGAA] [+] EMBL CD093197 [CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATTTTATTCTGAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCAACTGCATGAGATACTGATTTCTAGAACGTCCNNNCATTATCCAAAGACGATCACATAGAAGACAACTTTTGGTGTAACCAGTTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAATACATATACTGGAGTGAAAAACTCAGTCTGATGATTGTATGTACATCAATCCTCTAAACAGAAAGATCGTAATTATAATTTANAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCTGGATAGATAACGTAATAGTTAAATACATANCACTATAAAATTTAATGAATAGTAATTTTGTGAA] consensusID : consensus_2744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATGTTATTCTAAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCATTGCTTNAATTNTGATTTGCACGACCGTTACCTCTTTNTCCAAAAACTTCACTTAAANNAACTCTGTGGACGTCCGTNNNTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAATACATATACTGGAGTGAAAAACTCAGTCCTGATGATTGATGTCATCNNNAATCCTCTAAACAGAAAGATCGTAATTATAATTTAAAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCTGGATAGATAAACGTATAGTTAAATACAT] [+] EMBL CD093242 [CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATGTTATTCTAAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCATTGCTTNAATTNTGATTTGCACGACCGTTACCTCTTTNTCCAAAAACTTCACTTAAANNAACTCTGTGGACGTCCGTNNNTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAATACATATACTGGAGTGAAAAACTCAGTCCTGATGATTGATGTCATCNNNAATCCTCTAAACAGAAAGATCGTAATTATAATTTAAAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCTGGATAGATAAACGTATAGTTAAATACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2744#0 CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATTTTATTCT 60 consensus_2744#1 CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATGTTATTCT 60 **************************************************** ******* consensus_2744#0 GAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCAACTGCATGAGATAC 120 consensus_2744#1 AAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCA-TTGCTTNA-ATTN 118 ********************************************* *** * * ** consensus_2744#0 TGATTTCTA-GAACGTCCNNNCATTATCCAAAGACGATCACATAGAAGACAACTTTTGGT 179 consensus_2744#1 TGATTTGCACGACCGTTACCTCTTTNTCCAAAAACT-TCACTTAAANNAACTCTGTGGAC 177 ****** * ** *** * ** ****** ** **** ** * * ** * * consensus_2744#0 GTAACCAGTTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAAT 239 consensus_2744#1 GTCCGTNNNTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAAT 237 ** *************************************************** consensus_2744#0 ACATATACTGGAGTGAAAAACTCAGTC-TGATGATTG-TATGTACATCAATCCTCTAAAC 297 consensus_2744#1 ACATATACTGGAGTGAAAAACTCAGTCCTGATGATTGATGTCATCNNNAATCCTCTAAAC 297 *************************** ********* * * * ************ consensus_2744#0 AGAAAGATCGTAATTATAATTTANAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCT 357 consensus_2744#1 AGAAAGATCGTAATTATAATTTAAAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCT 357 *********************** ************************************ consensus_2744#0 GGATAGATAACGTAATAGTTAAATACATANCACTATAAAATTTAATGAATAGTAATTTTG 417 consensus_2744#1 GGATAGATAAACGTATAGTTAAATACAT-------------------------------- 385 ********** ************** consensus_2744#0 TGAA 421 consensus_2744#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||