These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [TCTAAAGCCATTAAATCGGGACTAAGATAACCAGCATTAACATTTCGTGAAGGTATTGCAGGTGAAGAAATTGAAGCAGTGTGTGTTTGTTGATCTAAAAGTGATGATCTTAAAATACCTTGATTATCTTCGTGAAACGGCTTGTATTCTGAAGGTGAAGGATTTAAAAACATATCACCGCCCGGACTTAAATAACCACTTGAACTTATACTCCCAACACATGACCTGCGTGGTACCACACTCATTCCATTGGGCAAAACGGGATTAGATCCCTGTAACTGGTGAGTATTGTCAATATTCTGAACGG] [+] EMBL CD067038 [TCTAAAGCCATTAAATCGGGACTAAGATAACCAGCATTAACATTTCGTGAAGGTATTGCAGGTGAAGAAATTGAAGCAGTGTGTGTTTGTTGATCTAAAAGTGATGATCTTAAAATACCTTGATTATCTTCGTGAAACGGCTTGTATTCTGAAGGTGAAGGATTTAAAAACATATCACCGCCCGGACTTAAATAACCACTTGAACTTATACTCCCAACACATGACCTGCGTGGTACCACACTCATTCCATTGGGCAAAACGGGATTAGATCCCTGTAACTGGTGAGTATTGTCAATATTCTGAACGG] consensusID : consensus_2759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [TCCGAGGCCAANAATTCGGCACGAGGAGATCACAAACACACACTGCTTCAATTTCTTCACCTGCAATACCTTCACGAAATGTTAATGCTGGTTATCTTAGTCCCGATTTAATGGCTTTAGAAGAAACTGATCCTGATTGGTTTGGAGGCCCTGCTGTAATGTGAATCTTTCCTTTTATTAAAGACGAAAATTAGACTCAATTTTTAGTCTTTTTTTAAGAAAAAAAATACTGGTGCCTCTAGGCTTTCAATTTGAAAGCTATTTAGTTCTATTGTTGCAATAAACTT] [+] EMBL CD083089 [TCCGAGGCCAANAATTCGGCACGAGGAGATCACAAACACACACTGCTTCAATTTCTTCACCTGCAATACCTTCACGAAATGTTAATGCTGGTTATCTTAGTCCCGATTTAATGGCTTTAGAAGAAACTGATCCTGATTGGTTTGGAGGCCCTGCTGTAATGTGAATCTTTCCTTTTATTAAAGACGAAAATTAGACTCAATTTTTAGTCTTTTTTTAAGAAAAAAAATACTGGTGCCTCTAGGCTTTCAATTTGAAAGCTATTTAGTTCTATTGTTGCAATAAACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2759#0 TCTAAAGCCATTAAATCGGGACTAAGATAACCAGCATTAACATTTCGTGAAGGTATTGCA 60 consensus_2759#1 TCCGAGGCCAANAATTCGGCACGAGGAGATCACAAACACACACTGCTTCAATTTCTT-CA 59 ** * **** ** **** ** * ** * * * *** * * * ** * ** ** consensus_2759#0 GGTG-AAGAAATTGAAGCAGTGTGTGT-TTGTTGATCTAAAAGTGATGATCTTAAAATAC 118 consensus_2759#1 CCTGCAATACCTTCACGAAATGTTAATGCTGGTTATCTT--AGTCCCGATTT---AATGG 114 ** ** * ** * * * *** * ** * **** *** *** * *** consensus_2759#0 CTTGATTATCTTCGTGAAACGGCTTGTATTCTGAAGGTGAAGGATTTAAAAACATATCAC 178 consensus_2759#1 CTTTAGAAGAAAC-TGATCCTGATTGG--TTTGGAGGCCCTG--CTGTAATGTGAATCTT 169 *** * * * *** * * *** * ** *** * * ** *** consensus_2759#0 CGCCCGGACTTAAATAACCACTTGAACTTATACTCCCAACACATGACCTGCGTGGTACCA 238 consensus_2759#1 TCCTTTTATTAAAGACGAAAATTAGACTCA-ATTTTTAGT-CTTTTTTTAAGAAAAAAAA 227 * * * ** * ** *** * * * * * * * * * * consensus_2759#0 CACTCATTCCATTGGGCAAAACGGGATTAGATCCCTGTAACTGGTGAGTATTGTCAATAT 298 consensus_2759#1 TACTGGTGCCTCTAGGCTTT-CAATTTGAAAGCTATTTAGTT--CTATTGTTG-CAATAA 283 *** * ** * *** * * * * * * ** * * * *** ***** consensus_2759#0 TCTGAACGG 307 consensus_2759#1 ACTT----- 287 ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||