cluster # 2759

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Schistosoma mansoni
cluster # 2759 cluster # 2759 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2759#0 length = 307 sequences # 1

consensus_2759#1 length = 287 sequences # 1

consensusID : consensus_2759#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [TCTAAAGCCATTAAATCGGGACTAAGATAACCAGCATTAACATTTCGTGAAGGTATTGCAGGTGAAGAAATTGAAGCAGTGTGTGTTTGTTGATCTAAAAGTGATGATCTTAAAATACCTTGATTATCTTCGTGAAACGGCTTGTATTCTGAAGGTGAAGGATTTAAAAACATATCACCGCCCGGACTTAAATAACCACTTGAACTTATACTCCCAACACATGACCTGCGTGGTACCACACTCATTCCATTGGGCAAAACGGGATTAGATCCCTGTAACTGGTGAGTATTGTCAATATTCTGAACGG]

[+] EMBL CD067038             [TCTAAAGCCATTAAATCGGGACTAAGATAACCAGCATTAACATTTCGTGAAGGTATTGCAGGTGAAGAAATTGAAGCAGTGTGTGTTTGTTGATCTAAAAGTGATGATCTTAAAATACCTTGATTATCTTCGTGAAACGGCTTGTATTCTGAAGGTGAAGGATTTAAAAACATATCACCGCCCGGACTTAAATAACCACTTGAACTTATACTCCCAACACATGACCTGCGTGGTACCACACTCATTCCATTGGGCAAAACGGGATTAGATCCCTGTAACTGGTGAGTATTGTCAATATTCTGAACGG]




>consensus_2759#0
TCTAAAGCCATTAAATCGGGACTAAGATAACCAGCATTAACATTTCGTGAAGGTATTGCA
GGTGAAGAAATTGAAGCAGTGTGTGTTTGTTGATCTAAAAGTGATGATCTTAAAATACCT
TGATTATCTTCGTGAAACGGCTTGTATTCTGAAGGTGAAGGATTTAAAAACATATCACCG
CCCGGACTTAAATAACCACTTGAACTTATACTCCCAACACATGACCTGCGTGGTACCACA
CTCATTCCATTGGGCAAAACGGGATTAGATCCCTGTAACTGGTGAGTATTGTCAATATTC
TGAACGG

consensusID : consensus_2759#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [TCCGAGGCCAANAATTCGGCACGAGGAGATCACAAACACACACTGCTTCAATTTCTTCACCTGCAATACCTTCACGAAATGTTAATGCTGGTTATCTTAGTCCCGATTTAATGGCTTTAGAAGAAACTGATCCTGATTGGTTTGGAGGCCCTGCTGTAATGTGAATCTTTCCTTTTATTAAAGACGAAAATTAGACTCAATTTTTAGTCTTTTTTTAAGAAAAAAAATACTGGTGCCTCTAGGCTTTCAATTTGAAAGCTATTTAGTTCTATTGTTGCAATAAACTT]

[+] EMBL CD083089             [TCCGAGGCCAANAATTCGGCACGAGGAGATCACAAACACACACTGCTTCAATTTCTTCACCTGCAATACCTTCACGAAATGTTAATGCTGGTTATCTTAGTCCCGATTTAATGGCTTTAGAAGAAACTGATCCTGATTGGTTTGGAGGCCCTGCTGTAATGTGAATCTTTCCTTTTATTAAAGACGAAAATTAGACTCAATTTTTAGTCTTTTTTTAAGAAAAAAAATACTGGTGCCTCTAGGCTTTCAATTTGAAAGCTATTTAGTTCTATTGTTGCAATAAACTT]




>consensus_2759#1
TCCGAGGCCAANAATTCGGCACGAGGAGATCACAAACACACACTGCTTCAATTTCTTCAC
CTGCAATACCTTCACGAAATGTTAATGCTGGTTATCTTAGTCCCGATTTAATGGCTTTAG
AAGAAACTGATCCTGATTGGTTTGGAGGCCCTGCTGTAATGTGAATCTTTCCTTTTATTA
AAGACGAAAATTAGACTCAATTTTTAGTCTTTTTTTAAGAAAAAAAATACTGGTGCCTCT
AGGCTTTCAATTTGAAAGCTATTTAGTTCTATTGTTGCAATAAACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2759#0      TCTAAAGCCATTAAATCGGGACTAAGATAACCAGCATTAACATTTCGTGAAGGTATTGCA 60
consensus_2759#1      TCCGAGGCCAANAATTCGGCACGAGGAGATCACAAACACACACTGCTTCAATTTCTT-CA 59
                      **  * ****  ** **** ** * ** * *    *   *** * * * **  * ** **

consensus_2759#0      GGTG-AAGAAATTGAAGCAGTGTGTGT-TTGTTGATCTAAAAGTGATGATCTTAAAATAC 118
consensus_2759#1      CCTGCAATACCTTCACGAAATGTTAATGCTGGTTATCTT--AGTCCCGATTT---AATGG 114
                        ** ** *  ** * * * ***   *  ** * ****   ***   *** *   ***  

consensus_2759#0      CTTGATTATCTTCGTGAAACGGCTTGTATTCTGAAGGTGAAGGATTTAAAAACATATCAC 178
consensus_2759#1      CTTTAGAAGAAAC-TGATCCTGATTGG--TTTGGAGGCCCTG--CTGTAATGTGAATCTT 169
                      *** *  *    * ***  * * ***   * ** ***    *   *  **     ***  

consensus_2759#0      CGCCCGGACTTAAATAACCACTTGAACTTATACTCCCAACACATGACCTGCGTGGTACCA 238
consensus_2759#1      TCCTTTTATTAAAGACGAAAATTAGACTCA-ATTTTTAGT-CTTTTTTTAAGAAAAAAAA 227
                        *    * * **      * **  *** * * *   *   * *    *  *    *  *

consensus_2759#0      CACTCATTCCATTGGGCAAAACGGGATTAGATCCCTGTAACTGGTGAGTATTGTCAATAT 298
consensus_2759#1      TACTGGTGCCTCTAGGCTTT-CAATTTGAAAGCTATTTAGTT--CTATTGTTG-CAATAA 283
                       ***  * **  * ***    *    * * * *  * **  *    * * *** ***** 

consensus_2759#0      TCTGAACGG 307
consensus_2759#1      ACTT----- 287
                       **