cluster # 2760

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Schistosoma mansoni
cluster # 2760 cluster # 2760 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2760#0 length = 530 sequences # 1

consensus_2760#1 length = 395 sequences # 1

consensusID : consensus_2760#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [ACATGCATTACGAGCAAAGATGGATGGTGGCTAGCAGTAGAATCCATTGATTACCACACTATGAAACGAATTCTTTGACTGAAGTTAAGAATGACTTTTATGGGTTTACACTTTTTATTGGGAACAGTAATGATTTAGAGCCCTAATGGGTTGAAAGAAATATCTAAAATTATATTTTCCGTTCATCATTTACAGCATATTTGGTTACATTTTATAGCTTTTCCCACGTCGTTTGCTACGTGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGTACCAAACAATTAATGTTGTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCATTTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATGTATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTACAGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGC]

[+] EMBL CD168124             [ACATGCATTACGAGCAAAGATGGATGGTGGCTAGCAGTAGAATCCATTGATTACCACACTATGAAACGAATTCTTTGACTGAAGTTAAGAATGACTTTTATGGGTTTACACTTTTTATTGGGAACAGTAATGATTTAGAGCCCTAATGGGTTGAAAGAAATATCTAAAATTATATTTTCCGTTCATCATTTACAGCATATTTGGTTACATTTTATAGCTTTTCCCACGTCGTTTGCTACGTGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGTACCAAACAATTAATGTTGTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCATTTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATGTATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTACAGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGC]




>consensus_2760#0
ACATGCATTACGAGCAAAGATGGATGGTGGCTAGCAGTAGAATCCATTGATTACCACACT
ATGAAACGAATTCTTTGACTGAAGTTAAGAATGACTTTTATGGGTTTACACTTTTTATTG
GGAACAGTAATGATTTAGAGCCCTAATGGGTTGAAAGAAATATCTAAAATTATATTTTCC
GTTCATCATTTACAGCATATTTGGTTACATTTTATAGCTTTTCCCACGTCGTTTGCTACG
TGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGTACCAAACAATTAATGTT
GTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCAT
TTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATG
TATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTAC
AGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGC

consensusID : consensus_2760#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [GTCAATATAAATTTGTTTACATTCTCAAATAGAGTGCACAATCCTAATAATTTTTTATCTTACATCATATGTATTTTATAGCTTTTCCCACGTCGTTTGCTACGTGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGCACCAAACAATTAATGTTGTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCATTTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATGTATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTACAGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGCG]

[-] EMBL CD067039             [GTCAATATAAATTTGTTTACATTCTCAAATAGAGTGCACAATCCTAATAATTTTTTATCTTACATCATATGTATTTTATAGCTTTTCCCACGTCGTTTGCTACGTGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGCACCAAACAATTAATGTTGTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCATTTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATGTATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTACAGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGCG]




>consensus_2760#1
GTCAATATAAATTTGTTTACATTCTCAAATAGAGTGCACAATCCTAATAATTTTTTATCT
TACATCATATGTATTTTATAGCTTTTCCCACGTCGTTTGCTACGTGTTCGTATATTTCGT
TTTAGTTGGTATAATAATGTTATTCGCACCAAACAATTAATGTTGTTTGAGTTCTTCATG
AATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCATTTGTCCTTATGTAGAT
TATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATGTATTTTCGGTGGGGCT
GAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTACAGGTGATCTTCTGCTA
TCTGCTGGTATGGATCATTGTGTGAAAATTTGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2760#0      ACATGCATTACGAGCAAAGATGGATGGTGGCTAGCAGTAGAATCCATTGATTACCACACT 60
consensus_2760#1      ------------------------------------------------------------
                                                                                  

consensus_2760#0      ATGAAACGAATTCTTTGACTGAAGTTAAGAATGACTTTTATGGGTTTACACTTTTTATTG 120
consensus_2760#1      ------------------------------------------------------------
                                                                                  

consensus_2760#0      GGAACAGTAATGATTTAGAGCCCTAATGGGTTGAAAGAAATATCTAAAATTATATTTTCC 180
consensus_2760#1      --GTCAATATAAATTTG-----TTTACATTCTCAAATAGA-GTGCACAATCCTAATAATT 52
                          ** **   ****       * *     * *** * *  *  * ***  ** *    

consensus_2760#0      GTTCATCATTTACAGCATATTTGGTTACATTTTATAGCTTTTCCCACGTCGTTTGCTACG 240
consensus_2760#1      TTTTATC--TTACATCATAT------GTATTTTATAGCTTTTCCCACGTCGTTTGCTACG 104
                       ** ***  ***** *****        ********************************

consensus_2760#0      TGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGTACCAAACAATTAATGTT 300
consensus_2760#1      TGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGCACCAAACAATTAATGTT 164
                      ****************************************** *****************

consensus_2760#0      GTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCAT 360
consensus_2760#1      GTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCAT 224
                      ************************************************************

consensus_2760#0      TTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATG 420
consensus_2760#1      TTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATG 284
                      ************************************************************

consensus_2760#0      TATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTAC 480
consensus_2760#1      TATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTAC 344
                      ************************************************************

consensus_2760#0      AGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGC- 530
consensus_2760#1      AGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGCG 395
                      **************************************************