These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [ACATGCATTACGAGCAAAGATGGATGGTGGCTAGCAGTAGAATCCATTGATTACCACACTATGAAACGAATTCTTTGACTGAAGTTAAGAATGACTTTTATGGGTTTACACTTTTTATTGGGAACAGTAATGATTTAGAGCCCTAATGGGTTGAAAGAAATATCTAAAATTATATTTTCCGTTCATCATTTACAGCATATTTGGTTACATTTTATAGCTTTTCCCACGTCGTTTGCTACGTGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGTACCAAACAATTAATGTTGTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCATTTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATGTATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTACAGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGC] [+] EMBL CD168124 [ACATGCATTACGAGCAAAGATGGATGGTGGCTAGCAGTAGAATCCATTGATTACCACACTATGAAACGAATTCTTTGACTGAAGTTAAGAATGACTTTTATGGGTTTACACTTTTTATTGGGAACAGTAATGATTTAGAGCCCTAATGGGTTGAAAGAAATATCTAAAATTATATTTTCCGTTCATCATTTACAGCATATTTGGTTACATTTTATAGCTTTTCCCACGTCGTTTGCTACGTGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGTACCAAACAATTAATGTTGTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCATTTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATGTATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTACAGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGC] consensusID : consensus_2760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [GTCAATATAAATTTGTTTACATTCTCAAATAGAGTGCACAATCCTAATAATTTTTTATCTTACATCATATGTATTTTATAGCTTTTCCCACGTCGTTTGCTACGTGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGCACCAAACAATTAATGTTGTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCATTTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATGTATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTACAGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGCG] [-] EMBL CD067039 [GTCAATATAAATTTGTTTACATTCTCAAATAGAGTGCACAATCCTAATAATTTTTTATCTTACATCATATGTATTTTATAGCTTTTCCCACGTCGTTTGCTACGTGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGCACCAAACAATTAATGTTGTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCATTTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATGTATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTACAGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2760#0 ACATGCATTACGAGCAAAGATGGATGGTGGCTAGCAGTAGAATCCATTGATTACCACACT 60 consensus_2760#1 ------------------------------------------------------------ consensus_2760#0 ATGAAACGAATTCTTTGACTGAAGTTAAGAATGACTTTTATGGGTTTACACTTTTTATTG 120 consensus_2760#1 ------------------------------------------------------------ consensus_2760#0 GGAACAGTAATGATTTAGAGCCCTAATGGGTTGAAAGAAATATCTAAAATTATATTTTCC 180 consensus_2760#1 --GTCAATATAAATTTG-----TTTACATTCTCAAATAGA-GTGCACAATCCTAATAATT 52 ** ** **** * * * *** * * * * *** ** * consensus_2760#0 GTTCATCATTTACAGCATATTTGGTTACATTTTATAGCTTTTCCCACGTCGTTTGCTACG 240 consensus_2760#1 TTTTATC--TTACATCATAT------GTATTTTATAGCTTTTCCCACGTCGTTTGCTACG 104 ** *** ***** ***** ******************************** consensus_2760#0 TGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGTACCAAACAATTAATGTT 300 consensus_2760#1 TGTTCGTATATTTCGTTTTAGTTGGTATAATAATGTTATTCGCACCAAACAATTAATGTT 164 ****************************************** ***************** consensus_2760#0 GTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCAT 360 consensus_2760#1 GTTTGAGTTCTTCATGAATAACATAAACTTCAGACTTCTTTGTCGTCACGTCCACTTCAT 224 ************************************************************ consensus_2760#0 TTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATG 420 consensus_2760#1 TTGTCCTTATGTAGATTATACCATTCGTCTATGGAATATAGCTAGTCACGTGCTCGTATG 284 ************************************************************ consensus_2760#0 TATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTAC 480 consensus_2760#1 TATTTTCGGTGGGGCTGAAGGTCACCGAGCTGAAGTTCTACATGGTGACCTATCCCTTAC 344 ************************************************************ consensus_2760#0 AGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGC- 530 consensus_2760#1 AGGTGATCTTCTGCTATCTGCTGGTATGGATCATTGTGTGAAAATTTGGCG 395 ************************************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||