These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [CCAAAAGTTAACTCAATAAATTTTCTTCAGCAATAAATGAATACATACTTCATTTGGTAGAGAATCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAAACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGAGGATTCTTTATGAAGGTAAAGAAAAGAATAGAGTTAGGATGTGTGAACGATTTTATACTAAAGAGATTATATAATATAATCCTAACCTTTAGTTTGCAAATATGTAAATGCCGCAACCCGTATTTAGTAGTAAACACGACGGTACTGGACGTCGAAGTGGCGCTTCGACATTGCTACTCTCATACAAGAACAGGAACAAGTTAATGTAATAACTAAACTCCAAACGC] [+] EMBL CD093509 [CCAAAAGTTAACTCAATAAATTTTCTTCAGCAATAAATGAATACATACTTCATTTGGTAGAGAATCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAAACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGAGGATTCTTTATGAAGGTAAAGAAAAGAATAGAGTTAGGATGTGTGAACGATTTTATACTAAAGAGATTATATAATATAATCCTAACCTTTAGTTTGCAAATATGTAAATGCCGCAACCCGTATTTAGTAGTAAACACGACGGTACTGGACGTCGAAGTGGCGCTTCGACATTGCTACTCTCATACAAGAACAGGAACAAGTTAATGTAATAACTAAACTCCAAACGC] consensusID : consensus_2766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [TCTTCAGGTAGCATAGGTCGTAATTTTCGTGCTTCTTTGTGACCATCCGGATGAATAACGCACCAAGTTGTATTAGGATATGGGAATTCGGACAGGCGGTTGGCAATGTTCCAAGGAGGTTTCTCAGAAAAATTCCAAACTGGTAGAAATTTCTCCTCTCTTTTTTCATTTGGTAGAGAATCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAAACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGAGGAG] [-] EMBL BG931958 [TCTTCAGGTAGCATAGGTCGTAATTTTCGTGCTTCTTTGTGACCATCCGGATGAATAACGCACCAAGTTGTATTAGGATATGGGAATTCGGACAGGCGGTTGGCAATGTTCCAAGGAGGTTTCTCAGAAAAATTCCAAACTGGTAGAAATTTCTCCTCTCTTTTTTCATTTGGTAGAGAATCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAAACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2766#0 ------------------------------------------------------------ consensus_2766#1 TCTTCAGGTAGCATAGGTCGTAATTTTCGTGCTTCTTTGTGACCATCCGGATGAATAACG 60 consensus_2766#0 ---------------------------------------------------CCAAAAGTT 9 consensus_2766#1 CACCAAGTTGTATTAGGATATGGGAATTCGGACAGGCGGTTGGCAATGTTCCAAGGAGGT 120 * * ** * consensus_2766#0 AACTCAATAAATTTTCTT-----CAGCAATAAATGAATACATACTTCATTTGGTAGAGAA 64 consensus_2766#1 TTCTCAGAAAAATTCCAAACTGGTAGAAATTTCTCCTCTCTTTTTTCATTTGGTAGAGAA 180 **** *** ** * ** *** * * * **************** consensus_2766#0 TCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAA 124 consensus_2766#1 TCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAA 240 ************************************************************ consensus_2766#0 ACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGA 184 consensus_2766#1 ACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGA 300 ************************************************************ consensus_2766#0 GGATTCTTTATGAAGGTAAAGAAAAGAATAGAGTTAGGATGTGTGAACGATTTTATACTA 244 consensus_2766#1 GGAG-------------------------------------------------------- 304 *** consensus_2766#0 AAGAGATTATATAATATAATCCTAACCTTTAGTTTGCAAATATGTAAATGCCGCAACCCG 304 consensus_2766#1 ------------------------------------------------------------ consensus_2766#0 TATTTAGTAGTAAACACGACGGTACTGGACGTCGAAGTGGCGCTTCGACATTGCTACTCT 364 consensus_2766#1 ------------------------------------------------------------ consensus_2766#0 CATACAAGAACAGGAACAAGTTAATGTAATAACTAAACTCCAAACGC 411 consensus_2766#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||