These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [GGAGTAGGTCACGTTCTCCCAAAAGAGGTAATAAGTTTGAGGATAAAATGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTATGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTT] [+] EMBL CD184256 [GGAGTAGGTCACGTTCTCCCAAAAGAGGTAATAAGTTTGAGGATAAAATGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTATGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTT] consensusID : consensus_281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [TTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTNAGCGAGTNTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTNTNGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCAAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTTAATGTTTATGGTAGTTTAAGTTTATCGTAGATTCTAGTTTATTAATAGAAAAA] [+] EMBL AA756913 [TTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTNAGCGAGTNTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTNTNGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCAAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTTAATGTTTATGGTAGTTTAAGTTTATCGTAGATTCTAGTTTATTAATAGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_281#0 GGAGTAGGTCACGTTCTCCCAAAAGAGGTAATAAGTTTGAGGATAAAATGAGTGGACTGT 60 consensus_281#1 -----------------------------------TTTGGCGATGGAGAGAGTGGACTGT 25 **** *** * *********** consensus_281#0 GAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTATGAATTGGAGTGT 120 consensus_281#1 GAAGAGGTGTAGTTGTATCGAGAGATGTGAGTNAGCGAGTNTATTTTTGAGTTGGAGTGT 85 ******************************* ******* ***** *** ********* consensus_281#0 ACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTG 180 consensus_281#1 ACTGACTAGACGGGAGTATAGTTTTTNTNGCGGCGGCGGTGGCGGCGACAAGAGTGGTTG 145 ************************** * ******************************* consensus_281#0 GTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTG 240 consensus_281#1 GTTGATGAGTTTCAGGAGCAAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTG 205 ******************* **************************************** consensus_281#0 TGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTG 300 consensus_281#1 TTAATGTTTATGGTAGT-TTAAGTTTATCGTAGATTCTAGTTTATTAATAGAAAAA---- 260 * ** * * ** ** * ** * * *** **** * * consensus_281#0 TACTGACTAGACGGGAGTATAGTTTT 326 consensus_281#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||