These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [ACTTCTACATAATGATGCTGTTTGCAATAAAACAACCAGTCGAACTTTCGGACATTAAGCAGGGTTAGTCGGATTGTTAAATTTAAATATCAAACTCATAAACTTAGATTAGCACAATAGGCAGGCACAGAAAAGTGTGAAATTTTAATTCCCATTAAGCCATAAATTAGACCGTTGTAACCAACTTATAATATAGTGCCGTTGAAAAGTGTGGACTTAATTTCGTCAAGTTAAAAACTGCTAAATCCAGACTCACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATTCACTGTTAGAAAGCTCATGATCATCCTGAAACTTAAGGAAACCTTCACCACCATGGCCTGAGGCGGGAATTAAATTTTTTAGGTAATACCTGTCATATATATTAGGATATTACTGTGCTCGTCAGTATTGAGGCGCTTAGAAGTA] [+] EMBL CD094360 [ACTTCTACATAATGATGCTGTTTGCAATAAAACAACCAGTCGAACTTTCGGACATTAAGCAGGGTTAGTCGGATTGTTAAATTTAAATATCAAACTCATAAACTTAGATTAGCACAATAGGCAGGCACAGAAAAGTGTGAAATTTTAATTCCCATTAAGCCATAAATTAGACCGTTGTAACCAACTTATAATATAGTGCCGTTGAAAAGTGTGGACTTAATTTCGTCAAGTTAAAAACTGCTAAATCCAGACTCACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATTCACTGTTAGAAAGCTCATGATCATCCTGAAACTTAAGGAAACCTTCACCACCATGGCCTGAGGCGGGAATTAAATTTTTTAGGTAATACCTGTCATATATATTAGGATATTACTGTGCTCGTCAGTATTGAGGCGCTTAGAAGTA] consensusID : consensus_2822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [TACCAAAAAAGTCTGTAACAAGTACGTGACGTATATCACGTCTAAATAAATCAGATCGAGTGATAACAGTTGACTGACATAATGAGAAAGGGCATAATTGGGAGAAATCATACAATGTTCTTTTGCTTGAAGGAGTAACAGACTCCAAAAACTGAAACGCATAATAAGAATATCGATCAGAAACATAGGTTCCGATTTCACGATCCGAATGGAGAGATAATGATTCTTCACCTATAGCGCTGCTACCGATGGCTACTACATTTGGCGAATAAAACAACTTGCCCATTGATTCAGCTTGACATGTATCGACAATGAATAGTAATTCATGATACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATTCACTGTTAGAAA] [+] EMBL CD137830 [TACCAAAAAAGTCTGTAACAAGTACGTGACGTATATCACGTCTAAATAAATCAGATCGAGTGATAACAGTTGACTGACATAATGAGAAAGGGCATAATTGGGAGAAATCATACAATGTTCTTTTGCTTGAAGGAGTAACAGACTCCAAAAACTGAAACGCATAATAAGAATATCGATCAGAAACATAGGTTCCGATTTCACGATCCGAATGGAGAGATAATGATTCTTCACCTATAGCGCTGCTACCGATGGCTACTACATTTGGCGAATAAAACAACTTGCCCATTGATTCAGCTTGACATGTATCGACAATGAATAGTAATTCATGATACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATTCACTGTTAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2822#0 ACTTCTACATAATGATGCTGTTTGCAATAAAACAACCAGTCGAACTTTCGGACATTAAGC 60 consensus_2822#1 ---------TACCAAAAAAGTCTGTAACAAGT--ACGTGACGTATATCACGTC--TAAAT 47 ** * ** ** ** ** ** * ** * * * * *** consensus_2822#0 AGGGTTAGTCGGATTGTTAAATTTAAATATCAAACTCATAAACTTAGATTAGCACAATAG 120 consensus_2822#1 AAATCAGATCGAGTGATAACAGTTGACTGACATAATGAGAAAG-------GGCATAATTG 100 * *** * * * * ** * * ** * * * *** *** *** * consensus_2822#0 GCAGGCACAGAAAAGTGTGAAATTTTAATTCCCATTAAGCCATAAATTAGACCGTTGTAA 180 consensus_2822#1 GGAG-------AAATCATACAATGTTCTTTTGCTTGAAGGAGTAA--CAGACTCCAAAAA 151 * ** *** * *** ** ** * * *** *** **** ** consensus_2822#0 CC--AACTTATAATAT-AGTGCCGTTGAAAAGTGTGGACTTAATTTCGTCAAGTTAAAAA 237 consensus_2822#1 CTGAAACGCATAATAAGAATATCGATCAGAAACATAGGTTCCGATTTCACGATCCGAATG 211 * *** ****** * * ** * * ** * * * ** * * ** consensus_2822#0 CTGCTAAATCCAGACT-CACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATT 296 consensus_2822#1 GAGAGATAATGATTCTTCACCTATAGCGCTGCTACCGATGGCTACTACATTTGGCGAAT- 270 * * * * ** ****** **** ** ** * * * *** *** consensus_2822#0 CACTGTTAGAAAGCTCATGATCATCCTGAAACTTAAGGAAACCTTCACCACCATGGCCTG 356 consensus_2822#1 --------AAAACAACTTGCCCATT----GATTCAGCTTGACATGTATCGACAA----TG 314 *** * ** *** * * * ** * * * ** ** consensus_2822#0 AGGCGGGAATTAAATTTTTTAGGTAATACCTGTCATATATATTAGGATATTACTGTGCTC 416 consensus_2822#1 AATAGTAATTCATGATACCTACGTT---TCTGCCACATCTGTTCA-ATCGCATCGGCCAA 370 * * * * * * ** ** *** ** ** * ** ** * * * consensus_2822#0 GTCAGTATTGAGGCGCTTAGAAGTA 441 consensus_2822#1 TTCACTGTTAGAAA----------- 384 *** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||