cluster # 2827

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Schistosoma mansoni
cluster # 2827 cluster # 2827 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2827#0 length = 587 sequences # 1

consensus_2827#1 length = 335 sequences # 1

consensusID : consensus_2827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [GTTTATTTATATACTTATTTGAACACAAATATTGGTACAAGGAGGCACCAAATACATTTGCATCACACAATAACAATGAGGCCGAACCACGACATAACATCAATCTATAAAAACAGCTGTTGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGGATTATCGTAACGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCGTTTGCAATGGCGCAGGTGAGTTCTCTCACTAATAAAACGATGTCAGGGCGTCCCATAGAATTACATATAGTAACAGTTTTAGTGATTACAGGGAGGATTAAGCATCGAAGGTCCGATTGGGGAAAATTTGGCTTAATGGGATAAAGAACATGTATTGCGTATGCCCATCCACTGACTACCTTGACGCTGGATAATAGCTAGTGTAGGGGTAGGTTGGAAGAAAGCGAAGGGGGGCCGAACCACGACATAACATCAATCTATAAAAACAGCTGTTGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGGATTATCGTAACGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCG]

[+] EMBL CD094572             [GTTTATTTATATACTTATTTGAACACAAATATTGGTACAAGGAGGCACCAAATACATTTGCATCACACAATAACAATGAGGCCGAACCACGACATAACATCAATCTATAAAAACAGCTGTTGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGGATTATCGTAACGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCGTTTGCAATGGCGCAGGTGAGTTCTCTCACTAATAAAACGATGTCAGGGCGTCCCATAGAATTACATATAGTAACAGTTTTAGTGATTACAGGGAGGATTAAGCATCGAAGGTCCGATTGGGGAAAATTTGGCTTAATGGGATAAAGAACATGTATTGCGTATGCCCATCCACTGACTACCTTGACGCTGGATAATAGCTAGTGTAGGGGTAGGTTGGAAGAAAGCGAAGGGGGGCCGAACCACGACATAACATCAATCTATAAAAACAGCTGTTGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGGATTATCGTAACGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCG]




>consensus_2827#0
GTTTATTTATATACTTATTTGAACACAAATATTGGTACAAGGAGGCACCAAATACATTTG
CATCACACAATAACAATGAGGCCGAACCACGACATAACATCAATCTATAAAAACAGCTGT
TGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGGATTATCGTAA
CGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCGTTTGCAATGGCGCAGGTGAGTTC
TCTCACTAATAAAACGATGTCAGGGCGTCCCATAGAATTACATATAGTAACAGTTTTAGT
GATTACAGGGAGGATTAAGCATCGAAGGTCCGATTGGGGAAAATTTGGCTTAATGGGATA
AAGAACATGTATTGCGTATGCCCATCCACTGACTACCTTGACGCTGGATAATAGCTAGTG
TAGGGGTAGGTTGGAAGAAAGCGAAGGGGGGCCGAACCACGACATAACATCAATCTATAA
AAACAGCTGTTGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGG
ATTATCGTAACGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCG

consensusID : consensus_2827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [ACTACCTTGACGCTGGATAATAGCTAGTGTAGGGGTAGGTAGGAAGAAAGCGAAGGGGGGCCGAACCACGACATAACATCAATCTATAAAAACAGCTGTTGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGGATTATCGTAACGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCGTTTGCAATGGCGCAGGTGAGTTCTCTCACTAATAAAACGATGTCAGGGCGTCCCATAGAATTACATATAGTAACAGTTTTAGTGATTACAGGGAGGATTAAGCATCGAAGATCCGATTGGGGAAAATTTGGCTTAATGG]

[+] EMBL CD185470             [ACTACCTTGACGCTGGATAATAGCTAGTGTAGGGGTAGGTAGGAAGAAAGCGAAGGGGGGCCGAACCACGACATAACATCAATCTATAAAAACAGCTGTTGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGGATTATCGTAACGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCGTTTGCAATGGCGCAGGTGAGTTCTCTCACTAATAAAACGATGTCAGGGCGTCCCATAGAATTACATATAGTAACAGTTTTAGTGATTACAGGGAGGATTAAGCATCGAAGATCCGATTGGGGAAAATTTGGCTTAATGG]




>consensus_2827#1
ACTACCTTGACGCTGGATAATAGCTAGTGTAGGGGTAGGTAGGAAGAAAGCGAAGGGGGG
CCGAACCACGACATAACATCAATCTATAAAAACAGCTGTTGGACTGGGCCATATAGACAG
GTGAGGACTACCTGATTGGGTTTCGCGGGATTATCGTAACGGATGGTTAGAGACTGGGTT
ACATGGTTCAAGATCGTTTGCAATGGCGCAGGTGAGTTCTCTCACTAATAAAACGATGTC
AGGGCGTCCCATAGAATTACATATAGTAACAGTTTTAGTGATTACAGGGAGGATTAAGCA
TCGAAGATCCGATTGGGGAAAATTTGGCTTAATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2827#0      GTTTATTTATATACTTATTTGAACACAAATATTGGTACAAGGAGGCACCAAATACATTTG 60
consensus_2827#1      ------------ACTACCTTGACGCTGGATAATAGCTAGTGTAGG-----GGTAGGTAGG 43
                                  ***   ****      *** * *     * ***       **  *  *

consensus_2827#0      CATCACACAATAACAATGAGGCCGAACCACGACATAACATCAATCTATAAAAACAGCTGT 120
consensus_2827#1      AAGAAAGCGA----AGGGGGGCCGAACCACGACATAACATCAATCTATAAAAACAGCTGT 99
                       *  *  * *    *  * *****************************************

consensus_2827#0      TGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGGATTATCGTAA 180
consensus_2827#1      TGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGGATTATCGTAA 159
                      ************************************************************

consensus_2827#0      CGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCGTTTGCAATGGCGCAGGTGAGTTC 240
consensus_2827#1      CGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCGTTTGCAATGGCGCAGGTGAGTTC 219
                      ************************************************************

consensus_2827#0      TCTCACTAATAAAACGATGTCAGGGCGTCCCATAGAATTACATATAGTAACAGTTTTAGT 300
consensus_2827#1      TCTCACTAATAAAACGATGTCAGGGCGTCCCATAGAATTACATATAGTAACAGTTTTAGT 279
                      ************************************************************

consensus_2827#0      GATTACAGGGAGGATTAAGCATCGAAGGTCCGATTGGGGAAAATTTGGCTTAATGGGATA 360
consensus_2827#1      GATTACAGGGAGGATTAAGCATCGAAGATCCGATTGGGGAAAATTTGGCTTAATGG---- 335
                      *************************** ****************************    

consensus_2827#0      AAGAACATGTATTGCGTATGCCCATCCACTGACTACCTTGACGCTGGATAATAGCTAGTG 420
consensus_2827#1      ------------------------------------------------------------
                                                                                  

consensus_2827#0      TAGGGGTAGGTTGGAAGAAAGCGAAGGGGGGCCGAACCACGACATAACATCAATCTATAA 480
consensus_2827#1      ------------------------------------------------------------
                                                                                  

consensus_2827#0      AAACAGCTGTTGGACTGGGCCATATAGACAGGTGAGGACTACCTGATTGGGTTTCGCGGG 540
consensus_2827#1      ------------------------------------------------------------
                                                                                  

consensus_2827#0      ATTATCGTAACGGATGGTTAGAGACTGGGTTACATGGTTCAAGATCG 587
consensus_2827#1      -----------------------------------------------