These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [TAGTAGATGAATTTCGTCAAAAATAATTAATCTAACCAACTGTATATAAGCTCGCTCATCTCCACCACGACGTGTAATTACATCCCATTTTTCTGGTGTGCATACGATAACTTGCGTTTCATAAATTTGTTCACGACTAAGTTGGTGATCACCAGTAAGTTCATCAACTTTAATACCATAACTGCTTAACAGCTTATTAAAATTACCGACAACTTCTTGTACCAAAGATCGCATAGGTGCAATATAAATAAGTTTGAATTCATCTTTATTTATGGTACCATCAGGATTAATAAATTTGCCAAGTTCGTGCATAATACATAATAAAGCTACGTTTGTTTTACCAGCACCAGTAGGAGCACATAGCAGCAGATTTTCATCCGTTTCCATTGCAGCATGGTATAAACGACTTTGGATTAAGTTGAGAGTTTTGCAACCTTCAAAGGCAGCTTGTGCATATGCAGGTAGTTTTTCAATTTTTATTAGAGTTTCGCCTGGTTCTAAT] [+] EMBL CD095323 [TAGTAGATGAATTTCGTCAAAAATAATTAATCTAACCAACTGTATATAAGCTCGCTCATCTCCACCACGACGTGTAATTACATCCCATTTTTCTGGTGTGCATACGATAACTTGCGTTTCATAAATTTGTTCACGACTAAGTTGGTGATCACCAGTAAGTTCATCAACTTTAATACCATAACTGCTTAACAGCTTATTAAAATTACCGACAACTTCTTGTACCAAAGATCGCATAGGTGCAATATAAATAAGTTTGAATTCATCTTTATTTATGGTACCATCAGGATTAATAAATTTGCCAAGTTCGTGCATAATACATAATAAAGCTACGTTTGTTTTACCAGCACCAGTAGGAGCACATAGCAGCAGATTTTCATCCGTTTCCATTGCAGCATGGTATAAACGACTTTGGATTAAGTTGAGAGTTTTGCAACCTTCAAAGGCAGCTTGTGCATATGCAGGTAGTTTTTCAATTTTTATTAGAGTTTCGCCTGGTTCTAAT] consensusID : consensus_2849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [CATCCAACGACGGCAGTGGCGGCGGAGAAAAATGGGATGTAATTACACGTCGTGGTGGAGATGAGCGAGCTTATATACAGTTGGTTAGATTAATTATTTTTGACGAAATTCATCTACTACACGATGATCGTGGTCCAATACTGGAAGCTATTGTTGCACGAACTTTACGTGCTGTAGAGAGTACATCCGGTCTAGCTGTTTCTA] [+] EMBL CD130412 [CATCCAACGACGGCAGTGGCGGCGGAGAAAAATGGGATGTAATTACACGTCGTGGTGGAGATGAGCGAGCTTATATACAGTTGGTTAGATTAATTATTTTTGACGAAATTCATCTACTACACGATGATCGTGGTCCAATACTGGAAGCTATTGTTGCACGAACTTTACGTGCTGTAGAGAGTACATCCGGTCTAGCTGTTTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2849#0 TAGTAGATGAATTTCGTCAAAAATAATTAATCTAACCAACTGTATATAAGCTCGCTCATC 60 consensus_2849#1 ------------------------------------------------------------ consensus_2849#0 TCCACCACGACGTGTAATTACATCCCATTTTTCTGGTGTGCATACGATAACTTGCGTTTC 120 consensus_2849#1 ------------------------------------------------------------ consensus_2849#0 ATAAATTTGTTCACGACTAAGTTGGTGATCACCAGTAAGTTCATCAACTTTAATACCATA 180 consensus_2849#1 ------------------------------------------------------------ consensus_2849#0 ACTGCTTAACAGCTTATTAAAATTACCGACAACTTCTTGTACCAAAGATCGCATAGGTGC 240 consensus_2849#1 -----------------------------------CATCCAACGACGGCAGTGGCGGCG- 24 * * * * * * * ** * consensus_2849#0 AATATAAATAAGTTTGAATTCATCTTTATTTATGGTACCATCAGGATTA-ATAAATTTGC 299 consensus_2849#1 GAGAAAAATGGGATGTAATTACACGTCGTGGTGGAGATGAGCGAGCTTATATACAGTTGG 84 * * **** * * **** * * * * * * * * *** *** * *** consensus_2849#0 CAAGTTCGTGCATAATACATAATAAAGCTACGTTTGTTTTACCAGCACCAGTAGGAGCAC 359 consensus_2849#1 TTAGATTA---ATTATTTTTGACGAAATT-CATCTACTACACGATGATCG---TGGTCCA 137 ** * ** ** * * ** * * * * * ** * * * * * consensus_2849#0 ATAGCAGCAGATTTTCATCCGTTTCCATTGCAGCATGGTATAAACGACTTTGGATTAAGT 419 consensus_2849#1 ATACTGGAAGCTATTGTTGCACGAACTTTAC-GTGCTGTAGAGAGTACATCCGGTCTAGC 196 *** * ** * ** * * * ** * * *** * * ** * * * ** consensus_2849#0 TGAGAGTTTTGCAACCTTCAAAGGCAGCTTGTGCATATGCAGGTAGTTTTTCAATTTTTA 479 consensus_2849#1 TGT---TTCTA------------------------------------------------- 204 ** ** * consensus_2849#0 TTAGAGTTTCGCCTGGTTCTAAT 502 consensus_2849#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||