cluster # 2867

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Schistosoma mansoni
cluster # 2867 cluster # 2867 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2867#0 length = 667 sequences # 1

consensus_2867#1 length = 450 sequences # 1

consensusID : consensus_2867#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [TGATATCAAGACTTTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTGTGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAGATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTAGTGACTTGAGTTTATTCAGAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAACGGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGTAAAAGCACTTTGATAAATAACAATTATCCTTGAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTCGCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATTACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGGCTATAAACCGGTGAGGGTGAACGATCTGTCCTCATTCTCAGCTACTACTCGAGGATTCTTTTTGACAATGTCTTATCTCTGTGCTAGTGTGACGTTGCTACTTAAACCGACTCACGTATATACCAGACTTTATGTTGCATATAATTGACTGACTGGGGATTCGTCCTACCAATGGATGGGAGATTTTT]

[+] EMBL CD190789             [TGATATCAAGACTTTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTGTGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAGATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTAGTGACTTGAGTTTATTCAGAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAACGGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGTAAAAGCACTTTGATAAATAACAATTATCCTTGAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTCGCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATTACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGGCTATAAACCGGTGAGGGTGAACGATCTGTCCTCATTCTCAGCTACTACTCGAGGATTCTTTTTGACAATGTCTTATCTCTGTGCTAGTGTGACGTTGCTACTTAAACCGACTCACGTATATACCAGACTTTATGTTGCATATAATTGACTGACTGGGGATTCGTCCTACCAATGGATGGGAGATTTTT]




>consensus_2867#0
TGATATCAAGACTTTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTG
TGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAG
ATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTAGTGACTTGAGTTTATTCAG
AAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAACG
GAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGTAAAAGCACTTTGATAAA
TAACAATTATCCTTGAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTCG
CCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATTA
CATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGGC
TATAAACCGGTGAGGGTGAACGATCTGTCCTCATTCTCAGCTACTACTCGAGGATTCTTT
TTGACAATGTCTTATCTCTGTGCTAGTGTGACGTTGCTACTTAAACCGACTCACGTATAT
ACCAGACTTTATGTTGCATATAATTGACTGACTGGGGATTCGTCCTACCAATGGATGGGA
GATTTTT

consensusID : consensus_2867#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [TTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTGTGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAGATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTACGTGACTTGAGTTTATTCAGAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAACGGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTCGCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATTACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGGCTATAAACCGGTGAGGGTG]

[-] EMBL CD095699             [TTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTGTGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAGATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTACGTGACTTGAGTTTATTCAGAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAACGGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTCGCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATTACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGGCTATAAACCGGTGAGGGTG]




>consensus_2867#1
TTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTGTGCTAAAGTTGGA
GGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAGATTTCCTATTCGG
TGGTAGCATTCGGAATTTCGGACAGTTACGTGACTTGAGTTTATTCAGAAAGGACATAAC
TTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAACGGAATAAAAACTA
AACGCAATAGAAAAGTGAAGCAAACTAAGGCCATTTGCACCATCTCTTTGGAATCAGGGT
TTTTCGCCCTCGCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTT
TTTGTTCCATTACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATC
CCTGGCGGTGGCTATAAACCGGTGAGGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2867#0      TGATATCAAGACTTTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTG 60
consensus_2867#1      -------------TTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTG 47
                                   ***********************************************

consensus_2867#0      TGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAG 120
consensus_2867#1      TGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAG 107
                      ************************************************************

consensus_2867#0      ATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTA-GTGACTTGAGTTTATTCA 179
consensus_2867#1      ATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTACGTGACTTGAGTTTATTCA 167
                      ***************************************** ******************

consensus_2867#0      GAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAAC 239
consensus_2867#1      GAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAAC 227
                      ************************************************************

consensus_2867#0      GGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGTAAAAGCACTTTGATAA 299
consensus_2867#1      GGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGG----------------- 270
                      *******************************************                 

consensus_2867#0      ATAACAATTATCCTTGAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTC 359
consensus_2867#1      -------------------CCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTC 311
                                         *****************************************

consensus_2867#0      GCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATT 419
consensus_2867#1      GCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATT 371
                      ************************************************************

consensus_2867#0      ACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGG 479
consensus_2867#1      ACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGG 431
                      ************************************************************

consensus_2867#0      CTATAAACCGGTGAGGGTGAACGATCTGTCCTCATTCTCAGCTACTACTCGAGGATTCTT 539
consensus_2867#1      CTATAAACCGGTGAGGGTG----------------------------------------- 450
                      *******************                                         

consensus_2867#0      TTTGACAATGTCTTATCTCTGTGCTAGTGTGACGTTGCTACTTAAACCGACTCACGTATA 599
consensus_2867#1      ------------------------------------------------------------
                                                                                  

consensus_2867#0      TACCAGACTTTATGTTGCATATAATTGACTGACTGGGGATTCGTCCTACCAATGGATGGG 659
consensus_2867#1      ------------------------------------------------------------
                                                                                  

consensus_2867#0      AGATTTTT 667
consensus_2867#1      --------