These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [GGATAACATGAAGGCAATTACAAAAAAGACATTTATATGATGCATGGAAAGGCCATTTACAAAGAGTGGTTATATAAATAGTGAAAAACAGTAGGTAGTTGAACAAAAAACATTCATAGGCAAAACAAAGCCGAAAAACAGCAGCTGTAGTTTGTCGAGCACGGATTAAATCTGAATGTATAATGCGATCAACATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATCAGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAATGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGCGCACA] [+] EMBL CD096031 [GGATAACATGAAGGCAATTACAAAAAAGACATTTATATGATGCATGGAAAGGCCATTTACAAAGAGTGGTTATATAAATAGTGAAAAACAGTAGGTAGTTGAACAAAAAACATTCATAGGCAAAACAAAGCCGAAAAACAGCAGCTGTAGTTTGTCGAGCACGGATTAAATCTGAATGTATAATGCGATCAACATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATCAGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAATGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGCGCACA] consensusID : consensus_2871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [TCAGATGAATACGGTATAACAAGTTGAACAATTTCCGGTGAAACAAACAGATCGTCAACATTATTTTGTAAGCCAATTAAAACAGCAGCTGGAGTTTGTCGAGCACGGATTAAATCTGAATGTATAATGCGATCAACTCATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATCAGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAATGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGTGCACA] [+] EMBL CD096006 [TCAGATGAATACGGTATAACAAGTTGAACAATTTCCGGTGAAACAAACAGATCGTCAACATTATTTTGTAAGCCAATTAAAACAGCAGCTGGAGTTTGTCGAGCACGGATTAAATCTGAATGTATAATGCGATCAACTCATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATCAGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAATGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGTGCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2871#0 GGATAACATGAAGGCAATTACAAAAAAGACATTTATATGATGCATGGAAAGGCCATTTAC 60 consensus_2871#1 -------------------------------------------TCAGATGAATACGGTAT 17 ** ** consensus_2871#0 AAAGAGTGGTTATATAAATAGTGAAAAACAGTAGGTAGTTGAACAAAAAACATTCATAGG 120 consensus_2871#1 AACAAGTTGAACAATTTCCGGTGAAACA-AACAGATCGTC--------AACATTATTTTG 68 ** *** * ** ****** * * ** * ** ****** * * consensus_2871#0 CAAAACAAAGCCGAAAAACAGCAGCTGTAGTTTGTCGAGCACGGATTAAATCTGAATGTA 180 consensus_2871#1 TAAGCCAATT----AAAACAGCAGCTGGAGTTTGTCGAGCACGGATTAAATCTGAATGTA 124 ** *** ************* ******************************** consensus_2871#0 TAATGCGATCAAC--ATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATC 238 consensus_2871#1 TAATGCGATCAACTCATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATC 184 ************* ********************************************* consensus_2871#0 AGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAA 298 consensus_2871#1 AGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAA 244 ************************************************************ consensus_2871#0 TGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGCGCACA 350 consensus_2871#1 TGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGTGCACA 296 ********************************************** ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||