cluster # 2899

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Schistosoma mansoni
cluster # 2899 cluster # 2899 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2899#0 length = 204 sequences # 1

consensus_2899#1 length = 154 sequences # 1

consensusID : consensus_2899#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTATAGGGGGGCTTGTGACATATCTCTGCACTGATCACCCACGTGATGTAACTCTTGTCTAGTATCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGATGTAACTCTTTTCTAGGCTCGGCCTACAGGGGC]

[+] EMBL CD097012             [AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTATAGGGGGGCTTGTGACATATCTCTGCACTGATCACCCACGTGATGTAACTCTTGTCTAGTATCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGATGTAACTCTTTTCTAGGCTCGGCCTACAGGGGC]




>consensus_2899#0
AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTAT
AGGGGGGCTTGTGACATATCTCTGCACTGATCACCCACGTGATGTAACTCTTGTCTAGTA
TCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGATGTAACTCT
TTTCTAGGCTCGGCCTACAGGGGC

consensusID : consensus_2899#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 154
fasta sequence

                              [ATCAGTGCAGAGATATGTCACAAGCCCCCTGTAGGCAGAGCCTAAACAAGAGTTATATCACCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAGAGCCTAGACTAAAGTTACAGCACCTGGGAGATCAGTGCACAGATATGTC]

[+] EMBL CD164663             [ATCAGTGCAGAGATATGTCACAAGCCCCCTGTAGGCAGAGCCTAAACAAGAGTTATATCACCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAGAGCCTAGACTAAAGTTACAGCACCTGGGAGATCAGTGCACAGATATGTC]




>consensus_2899#1
ATCAGTGCAGAGATATGTCACAAGCCCCCTGTAGGCAGAGCCTAAACAAGAGTTATATCA
CCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAGAGCCTAGACTAAAGT
TACAGCACCTGGGAGATCAGTGCACAGATATGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2899#0      AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTAT 60
consensus_2899#1      --------ATCAGTGCAGAGAT-------ATGTCACAAGCCCCCTGTAGGCAGAGCCTAA 45
                              **** ****  ***        **    **  *   *  ****   ***** 

consensus_2899#0      AGGGGGGCT-TGTGACAT-----ATCTCTGCACTGATCACCCAC---GTGATGTAACTCT 111
consensus_2899#1      ACAAGAGTTATATCACCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAG 105
                      *   * * * * * ** *     ***  ****  ***    ***   *   ******   

consensus_2899#0      TGTCTAGTATCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGA 171
consensus_2899#1      AGCCTAGACTAAAGTTACAGCA-----CCTGGGAGATCAGTGCACAGATATGTC------ 154
                       * ****  *    ******         ** ** ***  ***** ***    *      

consensus_2899#0      TGTAACTCTTTTCTAGGCTCGGCCTACAGGGGC 204
consensus_2899#1      ---------------------------------