These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [ATCATGGTGTATCGAGCCGCACGGGTACCCATGCCTGAAGGAAAATGATGTGTTGTCTTACAAGAATACCTGGCCATTCCATGGACTGGGTTGGAGCCATAAGCGGGGCAAGTGGCGCCCGGCACGACATTGTTGCTACAATACTTTTGCGAAACAGGGGAATCACACGTTGTTCCATGGAAATCACTATCAATAAGGATAAATAGGGCCCGGATTATCAAATACCGAAAGCATTGTTAATCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGGCAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTTGCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGCGAACTTCAACAAA] [+] EMBL CD097116 [ATCATGGTGTATCGAGCCGCACGGGTACCCATGCCTGAAGGAAAATGATGTGTTGTCTTACAAGAATACCTGGCCATTCCATGGACTGGGTTGGAGCCATAAGCGGGGCAAGTGGCGCCCGGCACGACATTGTTGCTACAATACTTTTGCGAAACAGGGGAATCACACGTTGTTCCATGGAAATCACTATCAATAAGGATAAATAGGGCCCGGATTATCAAATACCGAAAGCATTGTTAATCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGGCAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTTGCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGCGAACTTCAACAAA] consensusID : consensus_2903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [AAAATCTGCGCTTGCGCGGCGGAAATACCATTGCCACAGGTCAATACTTTTTTTTCGTTCAACAGCGCGTGGACAATACATTCACTTGCTTGTGCGATAAGCGGGGCAAGTTGTTCCCCCGCGTGCATTTTTGCTTCGATACTTTCGTGAAACAGGGTAATCACACGTTGTTCCATGGAAATCACTATCAATAAGGTTAAATAAGGCCCGGATTATCAAATACCGAAAGCATTTTTAATCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGGCAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTTGCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGCGAACTTCAACAA] [+] EMBL CD097115 [AAAATCTGCGCTTGCGCGGCGGAAATACCATTGCCACAGGTCAATACTTTTTTTTCGTTCAACAGCGCGTGGACAATACATTCACTTGCTTGTGCGATAAGCGGGGCAAGTTGTTCCCCCGCGTGCATTTTTGCTTCGATACTTTCGTGAAACAGGGTAATCACACGTTGTTCCATGGAAATCACTATCAATAAGGTTAAATAAGGCCCGGATTATCAAATACCGAAAGCATTTTTAATCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGGCAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTTGCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGCGAACTTCAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2903#0 ATCATGGTGTATCGAGCCGCACGGGTACCCATGCCTGAAGGAAAATGATGTGTTGTCTTA 60 consensus_2903#1 AAAATCTGCGCTTGCGCGGCGGAAATACCATTGCC-ACAGGTCAATACTTTTTTTTCGTT 59 * ** * * ** ** **** **** *** *** * * ** ** * consensus_2903#0 CAAGAATACCTGGCCATTCCATGGACTGGGTTGGAGCCATAAGCGGGGCAAGTGGCGCCC 120 consensus_2903#1 CAACAGCGCGTGGACAATACATTCACTTGCTTGT-GCGATAAGCGGGGCAAGTTGTTCCC 118 *** * * *** ** * *** *** * *** ** *************** * *** consensus_2903#0 GGCACGACATTGTTGCTACAATACTTTTGCGAAACAGGGGAATCACACGTTGTTCCATGG 180 consensus_2903#1 CCGCGTGCATTTTTGCTTCGATACTTTCGTGAAACAGGGTAATCACACGTTGTTCCATGG 178 **** ***** * ******* * ********* ******************** consensus_2903#0 AAATCACTATCAATAAGGATAAATAGGGCCCGGATTATCAAATACCGAAAGCATTGTTAA 240 consensus_2903#1 AAATCACTATCAATAAGGTTAAATAAGGCCCGGATTATCAAATACCGAAAGCATTTTTAA 238 ****************** ****** ***************************** **** consensus_2903#0 TCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGG 300 consensus_2903#1 TCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGG 298 ************************************************************ consensus_2903#0 CAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTT 360 consensus_2903#1 CAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTT 358 ************************************************************ consensus_2903#0 GCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGC 420 consensus_2903#1 GCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGC 418 ************************************************************ consensus_2903#0 GAACTTCAACAAA 433 consensus_2903#1 GAACTTCAACAA- 430 ************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||