cluster # 2903

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2903 cluster # 2903 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2903#0 length = 433 sequences # 1

consensus_2903#1 length = 430 sequences # 1

consensusID : consensus_2903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [ATCATGGTGTATCGAGCCGCACGGGTACCCATGCCTGAAGGAAAATGATGTGTTGTCTTACAAGAATACCTGGCCATTCCATGGACTGGGTTGGAGCCATAAGCGGGGCAAGTGGCGCCCGGCACGACATTGTTGCTACAATACTTTTGCGAAACAGGGGAATCACACGTTGTTCCATGGAAATCACTATCAATAAGGATAAATAGGGCCCGGATTATCAAATACCGAAAGCATTGTTAATCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGGCAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTTGCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGCGAACTTCAACAAA]

[+] EMBL CD097116             [ATCATGGTGTATCGAGCCGCACGGGTACCCATGCCTGAAGGAAAATGATGTGTTGTCTTACAAGAATACCTGGCCATTCCATGGACTGGGTTGGAGCCATAAGCGGGGCAAGTGGCGCCCGGCACGACATTGTTGCTACAATACTTTTGCGAAACAGGGGAATCACACGTTGTTCCATGGAAATCACTATCAATAAGGATAAATAGGGCCCGGATTATCAAATACCGAAAGCATTGTTAATCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGGCAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTTGCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGCGAACTTCAACAAA]




>consensus_2903#0
ATCATGGTGTATCGAGCCGCACGGGTACCCATGCCTGAAGGAAAATGATGTGTTGTCTTA
CAAGAATACCTGGCCATTCCATGGACTGGGTTGGAGCCATAAGCGGGGCAAGTGGCGCCC
GGCACGACATTGTTGCTACAATACTTTTGCGAAACAGGGGAATCACACGTTGTTCCATGG
AAATCACTATCAATAAGGATAAATAGGGCCCGGATTATCAAATACCGAAAGCATTGTTAA
TCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGG
CAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTT
GCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGC
GAACTTCAACAAA

consensusID : consensus_2903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [AAAATCTGCGCTTGCGCGGCGGAAATACCATTGCCACAGGTCAATACTTTTTTTTCGTTCAACAGCGCGTGGACAATACATTCACTTGCTTGTGCGATAAGCGGGGCAAGTTGTTCCCCCGCGTGCATTTTTGCTTCGATACTTTCGTGAAACAGGGTAATCACACGTTGTTCCATGGAAATCACTATCAATAAGGTTAAATAAGGCCCGGATTATCAAATACCGAAAGCATTTTTAATCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGGCAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTTGCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGCGAACTTCAACAA]

[+] EMBL CD097115             [AAAATCTGCGCTTGCGCGGCGGAAATACCATTGCCACAGGTCAATACTTTTTTTTCGTTCAACAGCGCGTGGACAATACATTCACTTGCTTGTGCGATAAGCGGGGCAAGTTGTTCCCCCGCGTGCATTTTTGCTTCGATACTTTCGTGAAACAGGGTAATCACACGTTGTTCCATGGAAATCACTATCAATAAGGTTAAATAAGGCCCGGATTATCAAATACCGAAAGCATTTTTAATCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGGCAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTTGCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGCGAACTTCAACAA]




>consensus_2903#1
AAAATCTGCGCTTGCGCGGCGGAAATACCATTGCCACAGGTCAATACTTTTTTTTCGTTC
AACAGCGCGTGGACAATACATTCACTTGCTTGTGCGATAAGCGGGGCAAGTTGTTCCCCC
GCGTGCATTTTTGCTTCGATACTTTCGTGAAACAGGGTAATCACACGTTGTTCCATGGAA
ATCACTATCAATAAGGTTAAATAAGGCCCGGATTATCAAATACCGAAAGCATTTTTAATC
CAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGGCA
ATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTTGC
TGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGCGA
ACTTCAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2903#0      ATCATGGTGTATCGAGCCGCACGGGTACCCATGCCTGAAGGAAAATGATGTGTTGTCTTA 60
consensus_2903#1      AAAATCTGCGCTTGCGCGGCGGAAATACCATTGCC-ACAGGTCAATACTTTTTTTTCGTT 59
                      *  **      * * ** **     ****  ****   ***  ***  * * ** ** * 

consensus_2903#0      CAAGAATACCTGGCCATTCCATGGACTGGGTTGGAGCCATAAGCGGGGCAAGTGGCGCCC 120
consensus_2903#1      CAACAGCGCGTGGACAATACATTCACTTGCTTGT-GCGATAAGCGGGGCAAGTTGTTCCC 118
                      *** *   * *** ** * ***  *** * ***  ** *************** *  ***

consensus_2903#0      GGCACGACATTGTTGCTACAATACTTTTGCGAAACAGGGGAATCACACGTTGTTCCATGG 180
consensus_2903#1      CCGCGTGCATTTTTGCTTCGATACTTTCGTGAAACAGGGTAATCACACGTTGTTCCATGG 178
                             **** ***** * ******* * ********* ********************

consensus_2903#0      AAATCACTATCAATAAGGATAAATAGGGCCCGGATTATCAAATACCGAAAGCATTGTTAA 240
consensus_2903#1      AAATCACTATCAATAAGGTTAAATAAGGCCCGGATTATCAAATACCGAAAGCATTTTTAA 238
                      ****************** ****** ***************************** ****

consensus_2903#0      TCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGG 300
consensus_2903#1      TCCAATGCACGGGTGGTGCGGTGCCGGTTTGGTCCAATGCTATCACATCAAAACGGCAGG 298
                      ************************************************************

consensus_2903#0      CAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTT 360
consensus_2903#1      CAATTTTGTCGTGGAGCTTTTGCTCCTGTAAAAAACGCATGGCGGTTTTGATAATCTTTT 358
                      ************************************************************

consensus_2903#0      GCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGC 420
consensus_2903#1      GCTGCTTGCGTTAGTCCACTGTTTCCAGTGCTGGTGCAAACCGCTTGTTGGTGCGCAAGC 418
                      ************************************************************

consensus_2903#0      GAACTTCAACAAA 433
consensus_2903#1      GAACTTCAACAA- 430
                      ************